from pyqtgraph.Qt import QtGui, QtCore from scipy.fftpack import fft import numpy as np import scipy.stats from GraphicsObject import GraphicsObject import pyqtgraph.functions as fn from pyqtgraph import debug from pyqtgraph.Point import Point import struct __all__ = ['PlotCurveItem'] class PlotCurveItem(GraphicsObject): """Class representing a single plot curve. Provides: - Fast data update - FFT display mode - shadow pen - mouse interaction """ sigPlotChanged = QtCore.Signal(object) sigClicked = QtCore.Signal(object) def __init__(self, y=None, x=None, fillLevel=None, copy=False, pen=None, shadowPen=None, brush=None, parent=None, clickable=False): GraphicsObject.__init__(self, parent) self.clear() self.path = None self.fillPath = None self.exportOpts = False self.antialias = False if y is not None: self.updateData(y, x) ## this is disastrous for performance. #self.setCacheMode(QtGui.QGraphicsItem.DeviceCoordinateCache) self.metaData = {} self.opts = { #'spectrumMode': False, #'logMode': [False, False], #'downsample': False, #'alphaHint': 1.0, #'alphaMode': False, 'pen': 'w', 'shadowPen': None, 'fillLevel': fillLevel, 'brush': brush, } self.setPen(pen) self.setShadowPen(shadowPen) self.setFillLevel(fillLevel) self.setBrush(brush) self.setClickable(clickable) #self.fps = None def implements(self, interface=None): ints = ['plotData'] if interface is None: return ints return interface in ints def setClickable(self, s): self.clickable = s def getData(self): return self.xData, self.yData #if self.xData is None: #return (None, None) #if self.xDisp is None: #nanMask = np.isnan(self.xData) | np.isnan(self.yData) #if any(nanMask): #x = self.xData[~nanMask] #y = self.yData[~nanMask] #else: #x = self.xData #y = self.yData #ds = self.opts['downsample'] #if ds > 1: #x = x[::ds] ##y = resample(y[:len(x)*ds], len(x)) ## scipy.signal.resample causes nasty ringing #y = y[::ds] #if self.opts['spectrumMode']: #f = fft(y) / len(y) #y = abs(f[1:len(f)/2]) #dt = x[-1] - x[0] #x = np.linspace(0, 0.5*len(x)/dt, len(y)) #if self.opts['logMode'][0]: #x = np.log10(x) #if self.opts['logMode'][1]: #y = np.log10(y) #self.xDisp = x #self.yDisp = y ##print self.yDisp.shape, self.yDisp.min(), self.yDisp.max() ##print self.xDisp.shape, self.xDisp.min(), self.xDisp.max() #return self.xDisp, self.yDisp #def generateSpecData(self): #f = fft(self.yData) / len(self.yData) #self.ySpec = abs(f[1:len(f)/2]) #dt = self.xData[-1] - self.xData[0] #self.xSpec = linspace(0, 0.5*len(self.xData)/dt, len(self.ySpec)) def dataBounds(self, ax, frac=1.0): (x, y) = self.getData() if x is None or len(x) == 0: return (0, 0) if ax == 0: d = x elif ax == 1: d = y if frac >= 1.0: return (d.min(), d.max()) elif frac <= 0.0: raise Exception("Value for parameter 'frac' must be > 0. (got %s)" % str(frac)) else: return (scipy.stats.scoreatpercentile(d, 50 - (frac * 50)), scipy.stats.scoreatpercentile(d, 50 + (frac * 50))) #def setMeta(self, data): #self.metaData = data #def meta(self): #return self.metaData def setPen(self, *args, **kargs): self.opts['pen'] = fn.mkPen(*args, **kargs) self.update() def setShadowPen(self, *args, **kargs): self.opts['shadowPen'] = fn.mkPen(*args, **kargs) self.update() def setBrush(self, *args, **kargs): self.opts['brush'] = fn.mkBrush(*args, **kargs) self.update() def setFillLevel(self, level): self.opts['fillLevel'] = level self.fillPath = None self.update() #def setColor(self, color): #self.pen.setColor(color) #self.update() #def setAlpha(self, alpha, auto): #self.opts['alphaHint'] = alpha #self.opts['alphaMode'] = auto #self.update() #def setSpectrumMode(self, mode): #self.opts['spectrumMode'] = mode #self.xDisp = self.yDisp = None #self.path = None #self.update() #def setLogMode(self, mode): #self.opts['logMode'] = mode #self.xDisp = self.yDisp = None #self.path = None #self.update() #def setPointMode(self, mode): #self.opts['pointMode'] = mode #self.update() #def setDownsampling(self, ds): #if self.opts['downsample'] != ds: #self.opts['downsample'] = ds #self.xDisp = self.yDisp = None #self.path = None #self.update() def setData(self, *args, **kargs): """Same as updateData()""" self.updateData(*args, **kargs) def updateData(self, *args, **kargs): prof = debug.Profiler('PlotCurveItem.updateData', disabled=True) if len(args) == 1: kargs['y'] = args[0] elif len(args) == 2: kargs['x'] = args[0] kargs['y'] = args[1] if 'y' not in kargs or kargs['y'] is None: kargs['y'] = np.array([]) if 'x' not in kargs or kargs['x'] is None: kargs['x'] = np.arange(len(kargs['y'])) for k in ['x', 'y']: data = kargs[k] if isinstance(data, list): data = np.array(data) kargs[k] = data if not isinstance(data, np.ndarray) or data.ndim > 1: raise Exception("Plot data must be 1D ndarray.") if 'complex' in str(data.dtype): raise Exception("Can not plot complex data types.") prof.mark("data checks") #self.setCacheMode(QtGui.QGraphicsItem.NoCache) ## Disabling and re-enabling the cache works around a bug in Qt 4.6 causing the cached results to display incorrectly ## Test this bug with test_PlotWidget and zoom in on the animated plot self.prepareGeometryChange() self.yData = kargs['y'].view(np.ndarray) self.xData = kargs['x'].view(np.ndarray) prof.mark('copy') if self.xData.shape != self.yData.shape: raise Exception("X and Y arrays must be the same shape--got %s and %s." % (str(x.shape), str(y.shape))) self.path = None self.fillPath = None #self.xDisp = self.yDisp = None if 'pen' in kargs: self.setPen(kargs['pen']) if 'shadowPen' in kargs: self.setShadowPen(kargs['shadowPen']) if 'fillLevel' in kargs: self.setFillLevel(kargs['fillLevel']) if 'brush' in kargs: self.setBrush(kargs['brush']) prof.mark('set') self.update() prof.mark('update') self.sigPlotChanged.emit(self) prof.mark('emit') prof.finish() def generatePath(self, x, y): prof = debug.Profiler('PlotCurveItem.generatePath', disabled=True) path = QtGui.QPainterPath() ## Create all vertices in path. The method used below creates a binary format so that all ## vertices can be read in at once. This binary format may change in future versions of Qt, ## so the original (slower) method is left here for emergencies: #path.moveTo(x[0], y[0]) #for i in range(1, y.shape[0]): # path.lineTo(x[i], y[i]) ## Speed this up using >> operator ## Format is: ## numVerts(i4) 0(i4) ## x(f8) y(f8) 0(i4) <-- 0 means this vertex does not connect ## x(f8) y(f8) 1(i4) <-- 1 means this vertex connects to the previous vertex ## ... ## 0(i4) ## ## All values are big endian--pack using struct.pack('>d') or struct.pack('>i') n = x.shape[0] # create empty array, pad with extra space on either end arr = np.empty(n+2, dtype=[('x', '>f8'), ('y', '>f8'), ('c', '>i4')]) # write first two integers prof.mark('allocate empty') arr.data[12:20] = struct.pack('>ii', n, 0) prof.mark('pack header') # Fill array with vertex values arr[1:-1]['x'] = x arr[1:-1]['y'] = y arr[1:-1]['c'] = 1 prof.mark('fill array') # write last 0 lastInd = 20*(n+1) arr.data[lastInd:lastInd+4] = struct.pack('>i', 0) prof.mark('footer') # create datastream object and stream into path buf = QtCore.QByteArray(arr.data[12:lastInd+4]) # I think one unnecessary copy happens here prof.mark('create buffer') ds = QtCore.QDataStream(buf) prof.mark('create datastream') ds >> path prof.mark('load') prof.finish() return path def shape(self): if self.path is None: try: self.path = self.generatePath(*self.getData()) except: return QtGui.QPainterPath() return self.path def boundingRect(self): (x, y) = self.getData() if x is None or y is None or len(x) == 0 or len(y) == 0: return QtCore.QRectF() if self.opts['shadowPen'] is not None: lineWidth = (max(self.opts['pen'].width(), self.opts['shadowPen'].width()) + 1) else: lineWidth = (self.opts['pen'].width()+1) pixels = self.pixelVectors() if pixels is None: pixels = [Point(0,0), Point(0,0)] xmin = x.min() - pixels[0].x() * lineWidth xmax = x.max() + pixels[0].x() * lineWidth ymin = y.min() - abs(pixels[1].y()) * lineWidth ymax = y.max() + abs(pixels[1].y()) * lineWidth return QtCore.QRectF(xmin, ymin, xmax-xmin, ymax-ymin) def paint(self, p, opt, widget): prof = debug.Profiler('PlotCurveItem.paint '+str(id(self)), disabled=True) if self.xData is None: return #if self.opts['spectrumMode']: #if self.specPath is None: #self.specPath = self.generatePath(*self.getData()) #path = self.specPath #else: x = None y = None if self.path is None: x,y = self.getData() if x is None or len(x) == 0 or y is None or len(y) == 0: return self.path = self.generatePath(x,y) self.fillPath = None path = self.path prof.mark('generate path') if self.opts['brush'] is not None and self.opts['fillLevel'] is not None: if self.fillPath is None: if x is None: x,y = self.getData() p2 = QtGui.QPainterPath(self.path) p2.lineTo(x[-1], self.opts['fillLevel']) p2.lineTo(x[0], self.opts['fillLevel']) p2.lineTo(x[0], y[0]) p2.closeSubpath() self.fillPath = p2 p.fillPath(self.fillPath, self.opts['brush']) ## Copy pens and apply alpha adjustment sp = QtGui.QPen(self.opts['shadowPen']) cp = QtGui.QPen(self.opts['pen']) #for pen in [sp, cp]: #if pen is None: #continue #c = pen.color() #c.setAlpha(c.alpha() * self.opts['alphaHint']) #pen.setColor(c) ##pen.setCosmetic(True) if self.exportOpts is not False: aa = self.exportOpts['antialias'] else: aa = self.antialias p.setRenderHint(p.Antialiasing, aa) if sp is not None: p.setPen(sp) p.drawPath(path) p.setPen(cp) p.drawPath(path) prof.mark('drawPath') #print "Render hints:", int(p.renderHints()) prof.finish() #p.setPen(QtGui.QPen(QtGui.QColor(255,0,0))) #p.drawRect(self.boundingRect()) def clear(self): self.xData = None ## raw values self.yData = None self.xDisp = None ## display values (after log / fft) self.yDisp = None self.path = None #del self.xData, self.yData, self.xDisp, self.yDisp, self.path #def mousePressEvent(self, ev): ##GraphicsObject.mousePressEvent(self, ev) #if not self.clickable: #ev.ignore() #if ev.button() != QtCore.Qt.LeftButton: #ev.ignore() #self.mousePressPos = ev.pos() #self.mouseMoved = False #def mouseMoveEvent(self, ev): ##GraphicsObject.mouseMoveEvent(self, ev) #self.mouseMoved = True ##print "move" #def mouseReleaseEvent(self, ev): ##GraphicsObject.mouseReleaseEvent(self, ev) #if not self.mouseMoved: #self.sigClicked.emit(self) def mouseClickEvent(self, ev): if not self.clickable or ev.button() != QtCore.Qt.LeftButton: return ev.accept() self.sigClicked.emit(self) def setExportMode(self, export, opts): if export: self.exportOpts = opts if 'antialias' not in opts: self.exportOpts['antialias'] = True else: self.exportOpts = False class ROIPlotItem(PlotCurveItem): """Plot curve that monitors an ROI and image for changes to automatically replot.""" def __init__(self, roi, data, img, axes=(0,1), xVals=None, color=None): self.roi = roi self.roiData = data self.roiImg = img self.axes = axes self.xVals = xVals PlotCurveItem.__init__(self, self.getRoiData(), x=self.xVals, color=color) #roi.connect(roi, QtCore.SIGNAL('regionChanged'), self.roiChangedEvent) roi.sigRegionChanged.connect(self.roiChangedEvent) #self.roiChangedEvent() def getRoiData(self): d = self.roi.getArrayRegion(self.roiData, self.roiImg, axes=self.axes) if d is None: return while d.ndim > 1: d = d.mean(axis=1) return d def roiChangedEvent(self): d = self.getRoiData() self.updateData(d, self.xVals)