From b910655fedffeacb78664767535b170d967345f4 Mon Sep 17 00:00:00 2001 From: Anne de Jong Date: Sun, 22 Feb 2015 22:19:06 +0100 Subject: [PATCH] Improved interface --- CMakeLists.txt | 1 + gc.i | 48 + run.py | 50 +- src/solutioninstance.h | 3 +- src/tube.cpp | 67 +- src/tube.h | 14 +- testing.ipynb | 134 + timedomain.i | 75 +- timedomain.ipynb | 40044 ++++++++++++++++++++++++++++++++++++++- 9 files changed, 40344 insertions(+), 92 deletions(-) create mode 100644 gc.i create mode 100644 testing.ipynb diff --git a/CMakeLists.txt b/CMakeLists.txt index c4a30a3..b90e634 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -52,6 +52,7 @@ link_directories(/home/anne/bin/lib) add_library(sources ${src}) set_source_files_properties(timedomain.i PROPERTIES CPLUSPLUS ON) set_source_files_properties(timedomain.i PROPERTIES SWIG_FLAGS "-py3") +set_source_files_properties(timedomain.i PROPERTIES SWIG_FLAGS "-includeall") swig_add_module(timedomaineuler python timedomain.i) swig_link_libraries(timedomaineuler sources nonlin armadillo ${PYTHON_LIBRARIES}) diff --git a/gc.i b/gc.i new file mode 100644 index 0000000..a47943a --- /dev/null +++ b/gc.i @@ -0,0 +1,48 @@ +%module gc +%{ + #include "globalconf.h" +%} +namespace tasystem{ + + class Globalconf{ + public: + d T0,p0; /* Reference temperature and pressure (used to initialize a lot of variables. */ + // finite volume size, speed of sound, + // deltax of volume + d kappa; // Artificial viscosity tuning factor, + // typically between 0.25 and 0.75 + + gases::Gas gas; + + Globalconf(us Nf=0,d freq=100,const string& gasstring="air",d T0=293.15,d p0=101325.0,d kappa=1.0,bool driven=true); + const us& Nf() const; + const us& Ns() const; + static Globalconf airSTP(us Nf,d freq,d kappa=1.0); + ~Globalconf(){TRACE(-5,"~Globalconf()");} + bool isDriven() const; + void setDriven(bool d); + d getomg() const; + d getfreq() const; + d c0() const; + d rho0() const; + d deltanu0() const; + vd omgvec; + void setNf(us); + /* %rename set setNffreq */ + /* void set(us Nf,d freq); // Set data for new frequency and */ + // number of samples + void setomg(d omg); + void setfreq(d freq); + + void setGas(const string& mat); + const string& getGas() const; + + void setMass(d mass); + d getMass() const; + + void show() const; + // void setgas(string g){ gas(g);} + + }; /* Class Globalconf */ + +} /* namespace tasystem */ diff --git a/run.py b/run.py index 97e179c..0a03cdb 100755 --- a/run.py +++ b/run.py @@ -1,35 +1,56 @@ #!/usr/bin/python +if(!os.path.isfile('timedomaineuler.py')): + os.system('cmake . && make') from timedomaineuler import * + from numpy import * +import os import sys -#Globalconf accessable with cvar.gc -f=85.785 #Frequency of oscillation +from argparse import ArgumentParser +import argparse +parser=ArgumentParser(description="Compute response to tube\ +with sinusoidal pressure boundary condition",\ + formatter_class=argparse.ArgumentDefaultsHelpFormatter) +parser.add_argument('scheme',help="Scheme to use, either LF (Lax-Friedrichs) or\ + (MCM) MacCormack",choices=["LF","MCM"]) +parser.add_argument('-f','--freq',type=float,dest="f",default=85.785,\ + help="Frequency of oscillation") +parser.add_argument('-L','--length',type=float,dest="L",default=1.0,\ + help="Tube length") +parser.add_argument('-g','--gridpoints',type=int,dest="gp",default=300,\ + help="Number of gridpoints") +parser.add_argument('-c','--CFL',type=float,dest="CFL",default=0.5,\ + help="CFL Nummber") +parser.add_argument('-n','--saves_per_period',type=int,dest="nr_p_period", + default=50,help="Number of saves per period") +parser.add_argument('-p','--periods',type=float,dest="periods", + default=10,help="Periods to compute") +args=parser.parse_args() -L=1. #Length of tube -gp=300 #Number of gridpoints +globals().update(vars(args)) #Put options in global namespace +print("Frequency:",f) -nr_p_period=50 #Number of save per oscillation period -CFL=0.5; # CFL number -periods=100 #Number of periods to compute T=1/f gc=cvar.gc #Reference! -dx=L/(gp-1); # One left and right gp, so - -gc.setfreq(f) -tube=TubeLF(L,gp) +dx=L/(gp-1); # Grid spacing +gc.setfreq(f) # Set frequency in gc (for c++) +x=linspace(0,L,gp) # Grid. Not really needed +if scheme=="LF": + tube=TubeLF(L,gp) +else: + tube=TubeMCM(L,gp) dt=min(CFL*dx/gc.c0(),T/nr_p_period) -intsteps=int(floor(1./(gc.getfreq()*dt)/nr_p_period)) -x=linspace(0,L,gp) +intsteps=int(floor(1./(gc.getfreq()*dt)/nr_p_period)) #Number of + #steps per save # Create tube instance tube=TubeLF(L,gp) # To create a nice progress bar - def update_progress(progress): nbars=60 text1="\r[{0}{1}] {2}%".format('#'*int(floor(nbars*progress)),' '*int(nbars-floor(nbars*progress)),"%0.0f" %(100*progress)) @@ -37,7 +58,6 @@ def update_progress(progress): sys.stdout.write(text1) sys.stdout.flush() if(__name__=="__main__"): - # Create data storage uarr=zeros((nr_p_period*periods+1,gp),dtype=float) parr=zeros((nr_p_period*periods+1,gp),dtype=float) diff --git a/src/solutioninstance.h b/src/solutioninstance.h index 85fa8e5..c42b42d 100644 --- a/src/solutioninstance.h +++ b/src/solutioninstance.h @@ -17,7 +17,6 @@ namespace td{ extern tasystem::Globalconf gc; class SolutionInstance{ - vd rho_,m_,rhoE_; d time=0; public: @@ -29,9 +28,11 @@ namespace td{ vd& rho_ref(){ return rho_;} vd& m_ref() {return m_;} vd& rhoE_ref() {return rhoE_;} + const vd& rho() const {return rho_;} const vd& m() const {return m_;} const vd& rhoE() const {return rhoE_;} + vd p() const {return estat()*(gc.gas.gamma(gc.T0)-1);} vd u() const {return m()/rho();} vd ekin() const { return 0.5*rho()%pow(u(),2);} diff --git a/src/tube.cpp b/src/tube.cpp index 7841160..31a211f 100644 --- a/src/tube.cpp +++ b/src/tube.cpp @@ -21,17 +21,18 @@ d Tube::pleft(d t) { sol.setrho(gc.rho0()); } -void Tube::DoIntegration(d dt, int n) { +void Tube::DoIntegration(d dt, int maxnr) { TRACE(14, "Tube::DoIntegration()"); - int integrationnumber = 0; - while (integrationnumber < n) { - Integrate(dt); - integrationnumber++; + int intnr = 0; + for (intnr=0; intnr < maxnr; intnr++) { + sol=Integrate(dt); // Update solution } } -void TubeLF::Integrate(d dt) { +SolutionInstance TubeLF::Integrate(d dt) { // Integrate using Lax-Friedrich method + d t=sol.getTime(); d newt = t + dt; + // Define new solutioninstance SolutionInstance newsol(gp); newsol.setTime(newt); @@ -84,9 +85,57 @@ void TubeLF::Integrate(d dt) { rhoE(i)+=-la*(0-Eflux(i-1)); } // End right boundary - // Finally, update time and solution - sol = newsol; - t = newt; + return newsol; } + SolutionInstance TubeMCM::Integrate(d dt){ // Integrate using + // MacCormack method + d t=sol.getTime(); + d newt=t+dt; + d lambda=dt/dx; + + SolutionInstance predictor(gp); + { // Predictor step + const vd& oldrho=sol.rho(); + const vd& oldm=sol.m(); + const vd& oldrhoE=sol.rhoE(); + + vd& prho=predictor.rho_ref(); + vd& pm=predictor.m_ref(); + vd& prhoE=predictor.rhoE_ref(); + // Fluxes from previous solution + vd Cflux=sol.Cflux(); + vd Mflux=sol.Mflux(); + vd Eflux=sol.Eflux(); + + // Density + prho.tail(gp-1)=oldrho.tail(gp-1) + -lambda*(Cflux.tail(gp-1)-Cflux.head(gp-1)); + // The first element + prho(0)=oldrho(0)-lambda*(Cflux(1)-Cflux(0)); + + // Momentum + d oldu0=oldm(0)/oldrho(0); + d momfluxl = pow(oldm(0), 2)/oldrho(0) + pleft(t); + + pm.tail(gp-1)=oldm.tail(gp-1) + -lambda*(Mflux.tail(gp-1)-Mflux.head(gp-1)); + // The first element + pm(0)=oldm(0)-lambda*(Mflux(1)-momfluxl); + pm(gp-1)=0; + + // Energy + prhoE.tail(gp-1)=oldrhoE.tail(gp-1) + -lambda*(Eflux.tail(gp-1)-Eflux.head(gp-1)); + // The first element + prhoE(0)=oldrhoE(0)-lambda*(Eflux(1)-Eflux(0)); + + } + SolutionInstance corrector(gp); + // Temp test hack: + corrector=predictor; + corrector.setTime(newt); + + return corrector; + } // Integrate(dt) } // namespace td diff --git a/src/tube.h b/src/tube.h index 023c97a..355df64 100644 --- a/src/tube.h +++ b/src/tube.h @@ -21,9 +21,8 @@ namespace td { d dx, L; // Grid spacing, total length int gp; // Number of gridpoints SolutionInstance sol; // Solutions at time instances - d t = 0; // Current time d pleft(d t); // Compute pressure bc - virtual void Integrate(d dt) = 0; + virtual SolutionInstance Integrate(d dt) = 0; public: Tube(double L, int gp) throw(int); @@ -31,12 +30,18 @@ namespace td { SolutionInstance &getSol() { return sol; } void setSol(const SolutionInstance &sol) { this->sol = sol; } void DoIntegration(d dt, int n = 1); - d getTime() { return t; } + d getTime() { return sol.getTime(); } }; class TubeLF : public Tube { // Using Lax-Friedrichs method protected: - virtual void Integrate(d dt); + virtual SolutionInstance Integrate(d dt); + public: + using Tube::Tube; + }; + class TubeMCM : public Tube { // Using Lax-Friedrichs method + protected: + virtual SolutionInstance Integrate(d dt); public: using Tube::Tube; @@ -44,7 +49,6 @@ namespace td { } // namespace td - #endif // TUBE_H ////////////////////////////////////////////////////////////////////// diff --git a/testing.ipynb b/testing.ipynb new file mode 100644 index 0000000..6d229d9 --- /dev/null +++ b/testing.ipynb @@ -0,0 +1,134 @@ +{ + "metadata": { + "name": "", + "signature": "sha256:665d4d927eafbb088c892eb5950f2a0975c691bdbb983ca96c13a6336ba30584" + }, + "nbformat": 3, + "nbformat_minor": 0, + "worksheets": [ + { + "cells": [ + { + "cell_type": "code", + "collapsed": false, + "input": [ + "from timedomaineuler import *" + ], + "language": "python", + "metadata": {}, + "outputs": [], + "prompt_number": 1 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [ + "f=85.785 #Frequency of oscillation\n", + "L=1. #Length of tube\n", + "gp=300 #Number of gridpoints\n", + "\n", + "nr_p_period=50 #Number of save per oscillation period\n", + "CFL=0.5; # CFL number\n", + "periods=100 #Number of periods to compute\n", + "\n", + "T=1/f\n", + "gc=cvar.gc #Reference!\n", + "dx=L/(gp-1); # One left and right gp, so\n", + "\n", + "gc.setfreq(f)\n", + "tube=TubeLF(L,gp)\n", + "dt=min(CFL*dx/gc.c0(),T/nr_p_period)\n", + "intsteps=int(floor(1./(gc.getfreq()*dt)/nr_p_period))\n", + "x=linspace(0,L,gp)\n", + "# Create tube instance\n", + "tube=TubeLF(L,gp)\n", + "# To create a ni" + ], + "language": "python", + "metadata": {}, + "outputs": [], + "prompt_number": 5 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [ + "dt" + ], + "language": "python", + "metadata": {}, + "outputs": [ + { + "metadata": {}, + "output_type": "pyout", + "prompt_number": 6, + "text": [ + "4.873360558484559e-06" + ] + } + ], + "prompt_number": 6 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [ + "tube.DoIntegration(dt,1000)" + ], + "language": "python", + "metadata": {}, + "outputs": [], + "prompt_number": 7 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [ + "sol=tube.getSol()" + ], + "language": "python", + "metadata": {}, + "outputs": [], + "prompt_number": 8 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [ + "plot(sol.u())" + ], + "language": "python", + "metadata": {}, + "outputs": [ + { + "metadata": {}, + "output_type": "pyout", + "prompt_number": 9, + "text": [ + "[]" + ] + }, + { + "metadata": 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+ "text": [ + "" + ] + } + ], + "prompt_number": 9 + }, + { + "cell_type": "code", + "collapsed": false, + "input": [], + "language": "python", + "metadata": {}, + "outputs": [] + } + ], + "metadata": {} + } + ] +} \ No newline at end of file diff --git a/timedomain.i b/timedomain.i index 64a349c..cc0b049 100644 --- a/timedomain.i +++ b/timedomain.i @@ -9,7 +9,7 @@ #include "arma_numpy.h" #include "tube.h" - #include "globalconf.h" + SPOILNAMESPACE namespace td{ extern tasystem::Globalconf gc; @@ -50,54 +50,12 @@ class vd{ typedef double d; typedef unsigned us; -namespace tasystem{ - - class Globalconf{ - public: - d T0,p0; /* Reference temperature and pressure (used to initialize a lot of variables. */ - // finite volume size, speed of sound, - // deltax of volume - d kappa; // Artificial viscosity tuning factor, - // typically between 0.25 and 0.75 - - gases::Gas gas; - - Globalconf(us Nf=0,d freq=100,const string& gasstring="air",d T0=293.15,d p0=101325.0,d kappa=1.0,bool driven=true); - const us& Nf() const; - const us& Ns() const; - static Globalconf airSTP(us Nf,d freq,d kappa=1.0); - ~Globalconf(){TRACE(-5,"~Globalconf()");} - bool isDriven() const; - void setDriven(bool d); - d getomg() const; - d getfreq() const; - d c0() const; - d rho0() const; - d deltanu0() const; - vd omgvec; - void setNf(us); - /* %rename set setNffreq */ - /* void set(us Nf,d freq); // Set data for new frequency and */ - // number of samples - void setomg(d omg); - void setfreq(d freq); - - void setGas(const string& mat); - const string& getGas() const; - - void setMass(d mass); - d getMass() const; - - void show() const; - // void setgas(string g){ gas(g);} - - }; /* Class Globalconf */ - -} /* namespace tasystem */ - +%include "gc.i" namespace td{ + tasystem::Globalconf gc; + class SolutionInstance{ public: SolutionInstance(int gp,d rho=1.2); @@ -111,18 +69,10 @@ namespace td{ void setTime(d t); void setrho(d rho); }; - - tasystem::Globalconf gc; - - class Tube { - public: - d dx, L; // Grid spacing, total length - int gp; // Number of gridpoints - SolutionInstance sol; // Solutions at time instances - d t = 0; // Current time - d pleft(d t); // Compute pressure bc - virtual void Integrate(d dt) = 0; - + // %feature("abstract") Tube; // Define Tube abstract + class Tube { + protected: + virtual SolutionInstance Integrate(d dt)=0; public: Tube(double L, int gp) throw(int); virtual ~Tube() {} @@ -132,9 +82,16 @@ namespace td{ d getTime() { return t; } }; class TubeLF:public Tube{ - virtual void Integrate(d dt); + protected: + virtual SolutionInstance Integrate(d dt); public: TubeLF(d L,int gp); }; + class TubeMCM:public Tube{ + protected: + virtual SolutionInstance Integrate(d dt); + public: + TubeMCM(d L,int gp); + }; } diff --git a/timedomain.ipynb b/timedomain.ipynb index 19ff696..522b55b 100644 --- a/timedomain.ipynb +++ b/timedomain.ipynb @@ -1,7 +1,7 @@ { "metadata": { "name": "", - "signature": 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