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Merge branch 'ja_knitr_sweave_updates'
This merges updates from Koji Yokota, and adapts the ctests accordingly.
This commit is contained in:
Scott Kostyshak
commit
299b730318
@ -54,6 +54,11 @@ export/.*/zh_CN/.*texF
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# see also INVERTED.TODO_export/export/latex/ja_wrong_auto_encoding_(dvi|pdf(|3)).*
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# For a discussion of alternatives for Japanese with LaTeX , see also
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# http://www.preining.info/blog/2014/12/writing-japanese-in-latex-part-1-introduction/
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#
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# Exception: ja knitr.lyx and sweave.lyx support only XeLaTeX with system fonts
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# because they use the "bxjsarticle" class
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!export/.*/ja/(knitr|sweave).*_(lyx.*|xhtml|pdf4_systemF)
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export/.*/ja/(knitr|sweave).*
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export/.*/ja/.*_(pdf[245]|dvi3).*
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# These files are not expected to compile, they use math-macros
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@ -4,7 +4,7 @@
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\begin_header
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\save_transient_properties true
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\origin /systemlyxdir/examples/ja/
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\textclass article
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\textclass bxjsarticle
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\use_default_options true
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\begin_modules
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knitr
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@ -12,14 +12,14 @@ knitr
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\maintain_unincluded_children false
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\language japanese
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\language_package default
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\inputencoding auto
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\inputencoding utf8-platex
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\fontencoding global
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\font_roman "palatino" "default"
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\font_sans "lmss" "default"
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\font_typewriter "lmtt" "default"
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\font_math "auto" "auto"
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\font_default_family default
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\use_non_tex_fonts false
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\use_non_tex_fonts true
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\font_sc false
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\font_osf false
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\font_sf_scale 100 100
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@ -210,6 +210,25 @@ knitr
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ソース文書へのリンクがあります。
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\end_layout
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\begin_layout Standard
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\SpecialChar LyX
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2.3以降、
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\series bold
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knitr
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\series default
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を使ってコンパイルするためには
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\family sans
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設定\SpecialChar menuseparator
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ファイル処理\SpecialChar menuseparator
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変換子
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\family default
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で
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\emph on
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needauth
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\emph default
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変換子の使用を可能にする必要があります。
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\end_layout
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\begin_layout Standard
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\series bold
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@ -220,12 +239,22 @@ knitr
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<show-off>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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show-off
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -243,11 +272,6 @@ df=data.frame(y=rnorm(100), x=1:100)
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summary(lm(y~x, data=df))
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -4,7 +4,7 @@
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\begin_header
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\save_transient_properties true
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\origin /systemlyxdir/examples/ja/
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\textclass jarticle
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\textclass bxjsarticle
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\begin_preamble
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%% maxwidth is the original width if it's less than linewidth
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%% otherwise use linewidth (to make sure the graphics do not exceed the margin)
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@ -31,7 +31,7 @@ sweave
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\font_typewriter "lmtt" "default"
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\font_math "auto" "auto"
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\font_default_family default
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\use_non_tex_fonts false
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\use_non_tex_fonts true
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\font_sc false
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\font_osf false
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\font_sf_scale 100 100
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@ -303,12 +303,22 @@ bin
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<where-is-R-bin,eval=FALSE>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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where-is-R-bin,eval=FALSE
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -316,11 +326,6 @@ status open
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R.home('bin')
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -355,12 +360,22 @@ Sweave.sty
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<sweave-sty,eval=FALSE>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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sweave-sty,eval=FALSE
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -368,11 +383,6 @@ status open
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file.path(R.home('share'), 'texmf', 'tex', 'latex')
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -463,12 +473,22 @@ useFancyQuotes
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<setup, keep.source=TRUE>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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setup, keep.source=TRUE
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -481,14 +501,28 @@ status open
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options(width = 70, useFancyQuotes = FALSE, digits = 4)
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\end_layout
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\begin_layout Plain Layout
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\end_inset
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@
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\end_layout
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\begin_layout Standard
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<sweave-manual, eval=FALSE, keep.source=TRUE>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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sweave-manual, eval=FALSE, keep.source=TRUE
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -501,9 +535,23 @@ options(width = 70, useFancyQuotes = FALSE, digits = 4)
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vignette("Sweave", package = "utils")
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\end_layout
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\end_inset
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下記は、どのSエンジンでも動作する単純な例です。
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\end_layout
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\begin_layout Standard
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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@
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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print-integers, keep.source=TRUE
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\end_layout
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\end_inset
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@ -511,19 +559,6 @@ vignette("Sweave", package = "utils")
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\end_layout
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\begin_layout Standard
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下記は、どのSエンジンでも動作する単純な例です。
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<print-integers, keep.source=TRUE>>=
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\end_layout
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\begin_layout Plain Layout
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## 1から10までの整数は
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@ -531,17 +566,31 @@ status open
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\begin_layout Plain Layout
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1:10
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1:10
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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@
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\end_layout
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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<<hide-results, results=hide>>=
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hide-results, results=hide
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -554,9 +603,23 @@ status open
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print(1:20)
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\end_layout
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\end_inset
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単純な計算機をエミュレートすることもできます。
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\end_layout
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\begin_layout Standard
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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@
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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calculator
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\end_layout
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\end_inset
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@ -564,19 +627,6 @@ print(1:20)
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\end_layout
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\begin_layout Standard
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単純な計算機をエミュレートすることもできます。
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<calculator>>=
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\end_layout
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\begin_layout Plain Layout
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1 + pi
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@ -587,11 +637,6 @@ status open
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sin(pi/6)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -602,12 +647,22 @@ sin(pi/6)
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<rnorm>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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rnorm
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -630,11 +685,6 @@ print(x)
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t1 <- t.test(x)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -728,12 +778,22 @@ iris
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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<<iris-summary>>=
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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iris-summary
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -741,11 +801,6 @@ status open
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summary(iris[,-5])
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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@ -782,16 +837,22 @@ name "tab:xtable-demo"
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\begin_layout Plain Layout
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\align center
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\begin_inset ERT
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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||||
\end_layout
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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<<xtable-demo,results=tex,echo=FALSE>>=
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xtable-demo,results=tex,echo=FALSE
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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@ -810,11 +871,6 @@ print(xtable(sapply(iris[,-5], quantile)), floating=FALSE)
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)')
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\end_layout
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\begin_layout Plain Layout
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||||
@
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\end_layout
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\end_inset
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@ -889,12 +945,22 @@ epsとpdfの両方をtrueにして、latexとpdflatexの両方を動作するよ
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\end_inset
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||||
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||||
\begin_inset ERT
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\begin_inset Flex Chunk
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||||
status open
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||||
\begin_layout Plain Layout
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||||
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||||
<<iris-pairs,fig=TRUE,width=4.5,height=4.5,eps=TRUE,pdf=TRUE>>=
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||||
\begin_inset Argument 1
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||||
status open
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||||
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||||
\begin_layout Plain Layout
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||||
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||||
iris-pairs,fig=TRUE,width=4.5,height=4.5,eps=TRUE,pdf=TRUE
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||||
\end_layout
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||||
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||||
\end_inset
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||||
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||||
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||||
\end_layout
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||||
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||||
\begin_layout Plain Layout
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||||
@ -902,11 +968,6 @@ status open
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||||
pairs(iris, col = iris$Species)
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||||
\end_layout
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||||
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||||
\begin_layout Plain Layout
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||||
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||||
@
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||||
\end_layout
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||||
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||||
\end_inset
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||||
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||||
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||||
@ -948,12 +1009,22 @@ status open
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||||
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||||
\begin_layout Plain Layout
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||||
\align center
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||||
\begin_inset ERT
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||||
\begin_inset Flex Chunk
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||||
status open
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||||
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||||
\begin_layout Plain Layout
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||||
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||||
<<iris-boxplots,fig=TRUE,width=7,height=2,keep.source=F,eps=T,pdf=T>>=
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||||
\begin_inset Argument 1
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||||
status open
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||||
|
||||
\begin_layout Plain Layout
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||||
|
||||
iris-boxplots,fig=TRUE,width=7,height=2,keep.source=F,eps=T,pdf=T
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||||
\end_layout
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||||
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||||
\end_inset
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||||
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||||
|
||||
\end_layout
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||||
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||||
\begin_layout Plain Layout
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||||
@ -966,11 +1037,6 @@ par(mar=c(4,5,.1,.3), las=1)
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||||
boxplot(Sepal.Length~Species,data=iris,horizontal=TRUE,xlab='Sepal.Length')
|
||||
\end_layout
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||||
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||||
\begin_layout Plain Layout
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||||
|
||||
@
|
||||
\end_layout
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||||
|
||||
\end_inset
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||||
|
||||
|
||||
@ -1409,7 +1475,7 @@ reference "tab:xtable-demo"
|
||||
\end_layout
|
||||
|
||||
\begin_layout Standard
|
||||
The user manual of Sweave is at
|
||||
Sweaveの利用者の手引きは
|
||||
\begin_inset Flex URL
|
||||
status collapsed
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||||
|
||||
@ -1420,8 +1486,7 @@ https://stat.ethz.ch/R-manual/R-devel/library/utils/doc/Sweave.pdf
|
||||
|
||||
\end_inset
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||||
|
||||
にあります。 The CRAN task view on 「Reproducible Research」にあるCRANタスクビューには、便利と思われるSweav
|
||||
e関連パッケージの一覧があります。
|
||||
にあります。「Reproducible Research」にあるCRANタスクビューには、便利と思われるSweave関連パッケージの一覧があります。
|
||||
\begin_inset Flex URL
|
||||
status collapsed
|
||||
|
||||
|
||||
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Block a user