diff --git a/lib/examples/sweave.lyx b/lib/examples/sweave.lyx index 4831fe6049..9bdb087e79 100644 --- a/lib/examples/sweave.lyx +++ b/lib/examples/sweave.lyx @@ -1,5 +1,5 @@ -#LyX 1.6.1 created this file. For more info see http://www.lyx.org/ -\lyxformat 345 +#LyX 2.0.0svn created this file. For more info see http://www.lyx.org/ +\lyxformat 410 \begin_document \begin_header \textclass article @@ -7,18 +7,25 @@ \begin_modules sweave \end_modules +\maintain_unincluded_children false \language english \inputencoding auto -\font_roman default -\font_sans default -\font_typewriter default +\fontencoding global +\font_roman lmodern +\font_sans lmss +\font_typewriter lmtt \font_default_family default +\use_non_tex_fonts false \font_sc false \font_osf false \font_sf_scale 100 \font_tt_scale 100 \graphics default +\default_output_format default +\output_sync 0 +\bibtex_command default +\index_command default \paperfontsize default \spacing single \use_hyperref false @@ -26,9 +33,18 @@ sweave \use_geometry false \use_amsmath 1 \use_esint 1 +\use_mhchem 1 +\use_mathdots 1 \cite_engine basic \use_bibtopic false +\use_indices false \paperorientation portrait +\suppress_date false +\use_refstyle 0 +\index Index +\shortcut idx +\color #008000 +\end_index \secnumdepth 3 \tocdepth 3 \paragraph_separation skip @@ -39,8 +55,8 @@ sweave \paperpagestyle default \tracking_changes false \output_changes false -\author "" -\author "" +\html_math_output 0 +\html_be_strict false \end_header \begin_body @@ -78,21 +94,21 @@ A simple example that will run in any S engine: The integers from 1 to 10 \begin_layout Chunk <>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk 1:10 -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk <>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk print(1:20) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk @ % the above is just to ensure that 2 code chunks can follow each other \end_layout @@ -102,21 +118,21 @@ We can also emulate a simple calculator: \begin_layout Chunk <>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk 1 + 1 -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk 1 + pi -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk sin(pi/2) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk @ \end_layout @@ -126,25 +142,25 @@ Now we look at Gaussian data: \begin_layout Chunk <<>>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk library(stats) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk x <- rnorm(20) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk print(x) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk print(t1 <- t.test(x)) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk @ \end_layout @@ -213,21 +229,21 @@ echo=true,keep.source=true \begin_layout Chunk <>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk # A comment -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk data(iris) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk summary(iris) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk @ % def \end_layout @@ -236,25 +252,39 @@ summary(iris) placement tbph wide false sideways false -status collapsed +status open -\begin_layout Chunk +\begin_layout Plain Layout +\noindent \align center +\begin_inset ERT +status open + +\begin_layout Plain Layout + <>= -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout library(graphics) -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout pairs(iris) -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout @ \end_layout +\end_inset + + +\end_layout + \begin_layout Plain Layout \begin_inset Caption @@ -277,21 +307,34 @@ Pairs plot of the iris data. placement tbph wide false sideways false -status collapsed +status open -\begin_layout Chunk +\begin_layout Plain Layout +\noindent \align center +\begin_inset ERT +status open + +\begin_layout Plain Layout + <>= -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout boxplot(Sepal.Length~Species,data=iris) -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout @ \end_layout +\end_inset + + +\end_layout + \begin_layout Plain Layout \begin_inset Caption @@ -311,13 +354,13 @@ Boxplot of sepal length grouped by species. \begin_layout Chunk <>= -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk function.that.comes.only.with.Splus(x) -\begin_inset Newline newline -\end_inset +\end_layout +\begin_layout Chunk @ \end_layout @@ -327,19 +370,32 @@ wide false sideways false status open -\begin_layout Chunk +\begin_layout Plain Layout +\noindent \align center +\begin_inset ERT +status open + +\begin_layout Plain Layout + <>= -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout boxplot(Sepal.Length~Species,data=iris) -\begin_inset Newline newline -\end_inset +\end_layout + +\begin_layout Plain Layout @ \end_layout +\end_inset + + +\end_layout + \begin_layout Plain Layout \begin_inset Caption