Also MacOSX ReadMe files. Note that a few lib/doc files are
also "updated" because trailing spaces are removed, but their file
formats are the same because they were recently updated at 83672113.
I did "git checkout LFUNs.lyx" because this file is generated
automatically and has a special header.
Implement a more simple and elegant integration of the R package knitr. Now,
lyxknitr.R does not need to move or copy files at all.
This also fixes a bug: when /tmp was on a different file system (e.g.
encrypted home), lyxknitr.R failed to move files to /tmp because it relied on
R's 'file.rename' function, which in turn relied on the rename function in
<stdio.h>, which was failing with the EXDEV errno.
Patch from Yihui Xie.
