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639 lines
9.9 KiB
Plaintext
639 lines
9.9 KiB
Plaintext
#LyX 1.5.5 created this file. For more info see http://www.lyx.org/
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\lyxformat 276
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\begin_document
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\begin_header
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\textclass jss
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\begin_preamble
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%the following commands are used only for articles and codesnippets
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\author{First Author\\Affiliation of the first author \And
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Second Author\\Affiliation of the second author \AND
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Third Author\\Affiliation of the third author}
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\title{Article About the Use of Package \pkg{foo} in \proglang{R}}
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% the same as above, without any formatting
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\Plainauthor{First Author, Second Author, Third author}
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\Plaintitle{Article About the Use of Package foo in R}
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%if necessary, provide a short title
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\Shorttitle{Package foo in R}
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\Abstract{This is the abstract of the article.}
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%at least one keyword is needed
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\Keywords{keyword 1, keyword 2, \pkg{foo}, \proglang{R}}
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%the same as above, without any formatting
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\Plainkeywords{keyword 1, keyword 2, foo, R}
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%the following commands are used only for book or software reviews
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%\Reviewer{Some Author\\University of Somewhere}
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%\Plainreviewer{Some Author}
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%the following commands are used only for book reviews
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%\Booktitle{LyX and \proglang{R}: Secrets of the LyX Master}
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%\Bookauthor{Book Author}
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%\Pubyear{2008}
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%\ISBN{0-12345-678-9}
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%\Pages{500}
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%the following command is used only for software reviews
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%\Softwaretitle{\proglang{gretl 1.7.4}}
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%the following commands are used only for book or software reviews
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%\Publisher{LyX Publishing Inc.}
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%\Pubaddress{LyX City}
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%\Price{USD 59.95 (P), USD 99.95 (H)}
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%\URL{http://www.lyx.org/}
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%without any formatting
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%\Plaintitle{LyX and R: Secrets of the LyX Master}
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%\Shorttitle{LyX and R}
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%the following commands are used for articles, codesnippets, book reviews and software reviews
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%publication information
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%do not use these commands before the article has been accepted
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%\Volume{00}
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%\Issue{0}
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%\Month{Month}
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%\Year{2000}
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%\Submitdate{2000-00-00}
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%\Acceptdate{2000-00-00}
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%The address of at least one author should be given in the following format
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\Address{
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First Author\\
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Department of Statistics\\
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University of Somewhere\\
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Somewhere, Somecountry\\
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E-mail: \email{first.author@lyx.org}\\
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URL: \url{http://www.lyx.org}
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}
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%you can add a telephone and fax number before the e-mail in the format
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%Telephone: +12/3/4567-89
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%Fax: +12/3/4567-89
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%if you use Sweave, include the following line (with % symbols):
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%% need no \usepackage{Sweave.sty}
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\end_preamble
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\options article
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\language english
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\inputencoding auto
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\font_roman default
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\font_sans default
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\font_typewriter default
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\font_default_family default
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\font_sc false
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\font_osf false
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\font_sf_scale 100
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\font_tt_scale 100
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\graphics default
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\paperfontsize default
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\spacing single
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\papersize default
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\use_geometry false
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\use_amsmath 0
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\use_esint 0
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\cite_engine natbib_authoryear
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\use_bibtopic false
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\paperorientation portrait
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\secnumdepth 3
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\tocdepth 3
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\paragraph_separation indent
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\defskip medskip
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\quotes_language english
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\papercolumns 1
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\papersides 1
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\paperpagestyle default
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\tracking_changes false
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\output_changes false
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\author ""
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\author ""
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\end_header
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\begin_body
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\begin_layout Standard
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\begin_inset Note Note
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status open
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\begin_layout Standard
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This is a template LyX file for an article written using the Journal of
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Statistical Software (JSS) LaTeX style file, which can be downloaded from
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http://www.jstatsoft.org/downloads/JSSstyle.zip.
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These files have to be installed before this template can be used.
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Consult chapter 5.1 in the LyX Customization manual.
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See also the documentation included with the JSS LaTeX style file.
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\end_layout
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\begin_layout Standard
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Note that title, author, address, abstract, keywords etc for this article
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style are written in the LaTeX preamble (accessed from Document\SpecialChar \menuseparator
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Settings...\SpecialChar \menuseparator
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LaTeX
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Preamble).
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\end_layout
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\begin_layout Standard
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To use the JSS codesnippet, bookreview or softwarereview styles, replace
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the option
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\begin_inset Quotes eld
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\end_inset
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article
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\begin_inset Quotes erd
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\end_inset
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in Document\SpecialChar \menuseparator
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Settings...\SpecialChar \menuseparator
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Document Class\SpecialChar \menuseparator
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Options with
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\begin_inset Quotes eld
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\end_inset
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codesnippet
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\begin_inset Quotes erd
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\end_inset
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,
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\begin_inset Quotes eld
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\end_inset
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bookreview
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\begin_inset Quotes erd
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\end_inset
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or
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\begin_inset Quotes eld
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\end_inset
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softwarereview
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\begin_inset Quotes erd
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\end_inset
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and remove/uncomment the relevant parts in the LaTeX Preamble.
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\end_layout
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\begin_layout Standard
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If you want to use this JSS article style for a non-JSS article, replace
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the option
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\begin_inset Quotes eld
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\end_inset
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article
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\begin_inset Quotes erd
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\end_inset
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with
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\begin_inset Quotes eld
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\end_inset
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nojss
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\begin_inset Quotes erd
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\end_inset
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.
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This will suppress the JSS-specic parts of the layout.
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\end_layout
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\begin_layout Standard
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To include the JSS-specific parts of the layout, the article has to be processed
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with PDF, i.e.
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you cannot process it with DVI or PS.
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However, if the option
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\begin_inset Quotes eld
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\end_inset
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nojss
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\begin_inset Quotes erd
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\end_inset
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is used, it can be processed with DVI or PS.
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Section
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\begin_inset Note Note
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status collapsed
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\begin_layout Standard
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The opt field provides bookmarks for PDF files
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\end_layout
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\end_inset
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\begin_inset OptArg
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status collapsed
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\begin_layout Standard
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About package foo in R
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\end_layout
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\end_inset
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About package
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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\backslash
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pkg
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\end_layout
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\end_inset
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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{
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\end_layout
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\end_inset
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foo
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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}
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\end_layout
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\end_inset
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in
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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\backslash
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proglang
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\end_layout
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\end_inset
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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{
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\end_layout
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\end_inset
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R
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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}
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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The special JSS style commands related to software and mathematical formulas
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are written as follows in LyX:
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\begin_inset ERT
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status open
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\begin_layout Standard
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\backslash
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proglang{R}
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\end_layout
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\end_inset
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or
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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\backslash
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proglang{
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\end_layout
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\end_inset
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R
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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}
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\end_layout
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\end_inset
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for the names of programming languages,
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\begin_inset ERT
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status open
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\begin_layout Standard
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\backslash
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pkg{foo}
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\end_layout
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\end_inset
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or
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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\backslash
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pkg{
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\end_layout
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\end_inset
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foo
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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}
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\end_layout
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\end_inset
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for software packages, and
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\begin_inset ERT
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status open
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\begin_layout Standard
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\backslash
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code{some code}
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\end_layout
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\end_inset
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or
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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\backslash
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pkg{
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\end_layout
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\end_inset
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some code
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\begin_inset ERT
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status collapsed
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\begin_layout Standard
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}
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\end_layout
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\end_inset
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for code;
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\begin_inset Formula $\E$
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\end_inset
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\begin_inset Note Note
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status open
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\begin_layout Standard
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written as
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\backslash
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E
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\end_layout
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\end_inset
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for expectations,
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\begin_inset Formula $\VAR$
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\end_inset
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\begin_inset Note Note
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status open
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\begin_layout Standard
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written as
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\backslash
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VAR
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\end_layout
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\end_inset
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for variances,
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\begin_inset Formula $\COV$
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\end_inset
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\begin_inset Note Note
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status open
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\begin_layout Standard
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written as
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\backslash
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COV
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\end_layout
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\end_inset
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for covariances, and
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\begin_inset Formula $\Prob$
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\end_inset
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\begin_inset Note Note
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status open
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\begin_layout Standard
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written as
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\backslash
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Prob
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\end_layout
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\end_inset
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for probabilities.
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\end_layout
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\begin_layout Standard
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Writing several lines of code:
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Standard
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\backslash
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begin{CodeChunk}
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\end_layout
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\begin_layout Standard
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\backslash
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begin{Code}
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\end_layout
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\begin_layout Standard
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first line of code
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\end_layout
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\begin_layout Standard
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second line of code
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\end_layout
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\begin_layout Standard
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third line of code
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\end_layout
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\begin_layout Standard
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\backslash
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end{Code}
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\end_layout
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\begin_layout Standard
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\backslash
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end{CodeChunk}
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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Alternatively, you can distinguish between input and output code:
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Standard
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\backslash
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begin{CodeChunk}
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\end_layout
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\begin_layout Standard
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\backslash
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begin{CodeInput}
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\end_layout
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\begin_layout Standard
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first line of input code
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\end_layout
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\begin_layout Standard
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second line of input code
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\end_layout
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\begin_layout Standard
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\backslash
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end{CodeInput}
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\end_layout
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\begin_layout Standard
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\backslash
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begin{CodeOutput}
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\end_layout
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\begin_layout Standard
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first line of output code
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\end_layout
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\begin_layout Standard
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second line of output code
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\end_layout
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\begin_layout Standard
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third line of output code
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\end_layout
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\begin_layout Standard
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\backslash
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end{CodeOutput}
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\end_layout
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\begin_layout Standard
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\backslash
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end{CodeChunk}
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Section*
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Acknowledgments
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\end_layout
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\begin_layout Standard
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Here you can write some acknowledgments.
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\end_layout
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\end_body
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\end_document
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