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Manuals, examples and templates that use (traditional) bibtex should have set the bibliography processor to bibtex. Else, these documents do not compile if a user has set the processor to 'biber' in the preferences
348 lines
4.7 KiB
Plaintext
348 lines
4.7 KiB
Plaintext
#LyX 2.0 created this file. For more info see http://www.lyx.org/
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\lyxformat 413
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\begin_document
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\begin_header
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\textclass RJournal
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\use_default_options true
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\begin_modules
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knitr
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\end_modules
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\maintain_unincluded_children false
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\language english
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\language_package none
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\inputencoding auto
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\fontencoding global
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\font_roman default
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\font_sans default
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\font_typewriter default
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\font_default_family default
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\use_non_tex_fonts false
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\font_sc false
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\font_osf false
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\font_sf_scale 100
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\font_tt_scale 100
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\graphics default
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\default_output_format default
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\output_sync 0
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\bibtex_command bibtex
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\index_command default
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\paperfontsize default
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\spacing single
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\use_hyperref false
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\papersize default
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\use_geometry false
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\use_amsmath 1
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\use_esint 1
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\use_mhchem 1
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\use_mathdots 1
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\cite_engine natbib_authoryear
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\use_bibtopic false
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\use_indices false
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\paperorientation portrait
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\suppress_date false
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\use_refstyle 1
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\index Index
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\shortcut idx
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\color #008000
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\end_index
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\secnumdepth 3
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\tocdepth 3
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\paragraph_separation indent
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\paragraph_indentation default
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\quotes_language english
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\papercolumns 1
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\papersides 1
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\paperpagestyle default
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\tracking_changes false
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\output_changes false
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\html_math_output 0
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\html_css_as_file 0
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\html_be_strict false
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\end_header
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\begin_body
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<setup, include=FALSE>>=
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\end_layout
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\begin_layout Plain Layout
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render_sweave() # use Schunk, Sinput and Soutput environments defined by
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RJournal
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\end_layout
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\begin_layout Plain Layout
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set_header(highlight = '') # no need for
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\backslash
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usepackage{Sweave}
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Title
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Capitalized Title Here
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\end_layout
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\begin_layout Author
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by Author A and Author B
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\end_layout
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\begin_layout Abstract
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An abstract of less than 150 words.
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\end_layout
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\begin_layout Section
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Section title in sentence case
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\end_layout
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\begin_layout Standard
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Write something here.
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A sample citation is
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\begin_inset CommandInset citation
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LatexCommand citet
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key "Lam94"
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\end_inset
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.
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\end_layout
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\begin_layout Section
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R code chunks
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\end_layout
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\begin_layout Standard
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Press
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\begin_inset Info
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type "shortcut"
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arg "ert-insert"
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\end_inset
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and input R code chunks which will be compiled with the
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\series bold
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knitr
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\series default
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package (
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\begin_inset Flex URL
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status collapsed
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\begin_layout Plain Layout
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http://yihui.name/knitr/
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\end_layout
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\end_inset
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).
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<sample-chunk, echo=TRUE>>=
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\end_layout
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\begin_layout Plain Layout
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x=1:10
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\end_layout
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\begin_layout Plain Layout
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rev(x)
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\end_layout
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\begin_layout Plain Layout
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summary(x)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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You can also plot your data; see Figure
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\begin_inset CommandInset ref
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LatexCommand ref
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reference "fig:sample-figure"
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\end_inset
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for example.
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\end_layout
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\begin_layout Standard
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\begin_inset Float figure
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placement tbph
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wide false
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sideways false
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status open
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\begin_layout Plain Layout
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<sample-figure, fig.width=5, fig.height=3, out.width='.4
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\backslash
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\backslash
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linewidth', fig.align='center', dev=c('pdf','postscript')>>=
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\end_layout
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\begin_layout Plain Layout
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par(mar = c(4,4,.1,.1))
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\end_layout
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\begin_layout Plain Layout
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plot(x, pch=19, col=1:10)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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\begin_inset Caption
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\begin_layout Plain Layout
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A sample figure.
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\begin_inset CommandInset label
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LatexCommand label
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name "fig:sample-figure"
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\end_inset
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\end_layout
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\end_inset
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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\begin_inset Note Note
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status open
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\begin_layout Plain Layout
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When you insert a BibTeX bibliography here, do not use any bib styles.
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The R Journal has declared the style to be
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\begin_inset Quotes eld
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\end_inset
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abbrvnat
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\begin_inset Quotes erd
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\end_inset
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.
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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\begin_inset CommandInset bibtex
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LatexCommand bibtex
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bibfiles "biblio"
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\end_inset
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\end_layout
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\begin_layout Address
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Author A
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\begin_inset Newline newline
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\end_inset
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Press
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\begin_inset Info
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type "shortcut"
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arg "newline-insert newline"
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\end_inset
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to input
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\begin_inset Newline newline
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\end_inset
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address here
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\begin_inset Newline newline
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\end_inset
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\begin_inset Flex Email
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status open
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\begin_layout Plain Layout
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author.a@email
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Address
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Author B
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\begin_inset Newline newline
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\end_inset
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\begin_inset Flex Email
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status open
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\begin_layout Plain Layout
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author.b@email
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\end_layout
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\end_inset
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\end_layout
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\end_body
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\end_document
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