mirror of
https://git.lyx.org/repos/lyx.git
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a15303b938
Especially after the change to use semantic linefeeds (7b23c76b),
the diffs are large and it's hard to figure out what diff is the
result of the linefeed change and which diff is the result of an
edit.
By updating the docs, it will make the edits easier to understand
from the diff.
This commit used the LyX binary to write the new .lyx files since
lyx2lyx does not apply semantic linefeeds.
I used the following command:
./development/tools/updatedocs.py [path to 'lyx' binary]
A few documents were not updated (e.g., the command sequence used
failed because a dialog about a missing dependency was shown).
I did not update Additional.lyx for any language since it is
undergoing changes. I also didn't change anything in doc/fr since JP
is working on some of those. I also didn't change doc/ru since it
appears Yuriy already updated those.
303 lines
5.0 KiB
Plaintext
303 lines
5.0 KiB
Plaintext
#LyX 2.4 created this file. For more info see https://www.lyx.org/
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\lyxformat 612
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\begin_document
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\begin_header
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\save_transient_properties true
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\origin /systemlyxdir/examples/Modules/
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\textclass article
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\use_default_options true
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\begin_modules
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knitr
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\end_modules
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\maintain_unincluded_children no
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\language english
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\language_package default
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\inputencoding utf8
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\fontencoding auto
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\font_roman "palatino" "default"
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\font_sans "lmss" "default"
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\font_typewriter "lmtt" "default"
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\font_math "auto" "auto"
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\font_default_family default
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\use_non_tex_fonts false
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\font_sc false
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\font_roman_osf false
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\font_sans_osf false
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\font_typewriter_osf false
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\font_sf_scale 100 100
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\font_tt_scale 100 100
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\use_microtype false
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\use_dash_ligatures false
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\graphics default
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\default_output_format default
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\output_sync 0
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\bibtex_command default
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\index_command default
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\paperfontsize default
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\spacing single
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\use_hyperref false
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\papersize default
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\use_geometry true
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\use_package amsmath 1
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\use_package amssymb 1
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\use_package cancel 1
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\use_package esint 1
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\use_package mathdots 1
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\use_package mathtools 1
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\use_package mhchem 1
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\use_package stackrel 1
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\use_package stmaryrd 1
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\use_package undertilde 1
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\cite_engine basic
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\cite_engine_type default
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\biblio_style plain
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\use_bibtopic false
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\use_indices false
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\paperorientation portrait
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\suppress_date false
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\justification true
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\use_refstyle 1
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\use_minted 0
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\use_lineno 0
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\index Index
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\shortcut idx
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\color #008000
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\end_index
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\leftmargin 2.5cm
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\topmargin 2.5cm
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\rightmargin 2.5cm
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\bottommargin 2.5cm
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\secnumdepth 3
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\tocdepth 3
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\paragraph_separation indent
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\paragraph_indentation default
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\is_math_indent 0
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\math_numbering_side default
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\quotes_style english
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\dynamic_quotes 0
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\papercolumns 1
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\papersides 1
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\paperpagestyle default
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\tablestyle default
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\tracking_changes false
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\output_changes false
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\change_bars false
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\postpone_fragile_content false
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\html_math_output 0
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\html_css_as_file 0
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\html_be_strict false
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\docbook_table_output 0
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\docbook_mathml_prefix 1
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\end_header
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\begin_body
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\begin_layout Title
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Using knitr with \SpecialChar LyX
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\end_layout
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\begin_layout Author
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Yihui Xie
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\begin_inset Foot
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status collapsed
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\begin_layout Plain Layout
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Department of Statistics,
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Iowa State University.
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Email:
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\begin_inset CommandInset href
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LatexCommand href
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name "xie@yihui.name"
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target "xie@yihui.name"
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type "mailto:"
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literal "false"
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\end_inset
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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The R (
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\begin_inset Flex URL
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status collapsed
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\begin_layout Plain Layout
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http://www.r-project.org
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\end_layout
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\end_inset
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) package
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\series bold
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knitr
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\series default
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is an alternative tool to Sweave based on a different design with more features.
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\SpecialChar LyX
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has native support to Sweave since version 2.0.0,
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and the support to
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\series bold
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knitr
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\series default
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was also added since 2.0.3.
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The usage is basically the same as the
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\family sans
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Sweave
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\family default
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module
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\begin_inset Foot
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status open
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\begin_layout Plain Layout
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read the \SpecialChar LyX
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/Sweave manual from
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\family sans
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Help\SpecialChar menuseparator
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Specific Manuals
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\end_layout
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\end_inset
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:
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\end_layout
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\begin_layout Enumerate
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Open a new \SpecialChar LyX
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document;
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\end_layout
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\begin_layout Enumerate
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Go to
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\family sans
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Document\SpecialChar menuseparator
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Settings\SpecialChar menuseparator
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Modules
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\family default
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and insert the module named
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\family sans
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Rnw (knitr)
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\family default
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;
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\end_layout
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\begin_layout Enumerate
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Then insert R code in the document with either
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\family sans
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Insert\SpecialChar menuseparator
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\SpecialChar TeX
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Code
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\family default
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or the
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\family sans
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Chunk
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\family default
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environment;
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\end_layout
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\begin_layout Standard
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The package website
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\begin_inset Flex URL
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status collapsed
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\begin_layout Plain Layout
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http://yihui.name/knitr
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\end_layout
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\end_inset
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has full documentation and demos of
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\series bold
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knitr
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\series default
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;
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many of the examples have links to the \SpecialChar LyX
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source documents.
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\end_layout
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\begin_layout Standard
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Since \SpecialChar LyX
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2.3,
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it is necessary to enable the use of
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\emph on
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needauth
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\emph default
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converters in
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\family sans
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Preferences\SpecialChar menuseparator
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File Handling\SpecialChar menuseparator
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Converters
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\family default
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in order to compile with
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\series bold
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knitr
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\series default
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.
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\end_layout
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\begin_layout Standard
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Note the
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\series bold
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knitr
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\series default
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package requires R >= 2.14.1,
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so you need to update R if you are using an old version of R.
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Here we show one chunk as a simple example:
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\end_layout
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\begin_layout Standard
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\begin_inset Flex Chunk
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status open
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\begin_layout Plain Layout
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\begin_inset Argument 1
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status open
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\begin_layout Plain Layout
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show-off
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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rnorm(5)
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\end_layout
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\begin_layout Plain Layout
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df=data.frame(y=rnorm(100),
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x=1:100)
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\end_layout
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\begin_layout Plain Layout
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summary(lm(y~x,
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data=df))
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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Please contact the package author in case of any problems.
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\end_layout
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\end_body
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\end_document
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