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43d7102204
Before, only PDFs were being generated so latex did not compile. Now, both PDF and EPS files are generated. This is not efficient but could save the user some pain, which is the goal of templates. An alternative would be to set the default output to use pdflatex.
348 lines
4.7 KiB
Plaintext
348 lines
4.7 KiB
Plaintext
#LyX 2.0 created this file. For more info see http://www.lyx.org/
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\lyxformat 413
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\begin_document
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\begin_header
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\textclass RJournal
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\use_default_options true
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\begin_modules
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knitr
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\end_modules
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\maintain_unincluded_children false
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\language english
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\language_package none
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\inputencoding auto
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\fontencoding global
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\font_roman default
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\font_sans default
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\font_typewriter default
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\font_default_family default
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\use_non_tex_fonts false
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\font_sc false
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\font_osf false
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\font_sf_scale 100
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\font_tt_scale 100
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\graphics default
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\default_output_format default
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\output_sync 0
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\bibtex_command default
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\index_command default
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\paperfontsize default
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\spacing single
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\use_hyperref false
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\papersize default
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\use_geometry false
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\use_amsmath 1
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\use_esint 1
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\use_mhchem 1
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\use_mathdots 1
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\cite_engine natbib_authoryear
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\use_bibtopic false
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\use_indices false
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\paperorientation portrait
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\suppress_date false
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\use_refstyle 1
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\index Index
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\shortcut idx
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\color #008000
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\end_index
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\secnumdepth 3
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\tocdepth 3
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\paragraph_separation indent
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\paragraph_indentation default
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\quotes_language english
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\papercolumns 1
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\papersides 1
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\paperpagestyle default
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\tracking_changes false
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\output_changes false
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\html_math_output 0
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\html_css_as_file 0
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\html_be_strict false
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\end_header
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\begin_body
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<setup, include=FALSE>>=
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\end_layout
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\begin_layout Plain Layout
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render_sweave() # use Schunk, Sinput and Soutput environments defined by
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RJournal
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\end_layout
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\begin_layout Plain Layout
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set_header(highlight = '') # no need for
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\backslash
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usepackage{Sweave}
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Title
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Capitalized Title Here
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\end_layout
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\begin_layout Author
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by Author A and Author B
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\end_layout
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\begin_layout Abstract
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An abstract of less than 150 words.
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\end_layout
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\begin_layout Section
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Section title in sentence case
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\end_layout
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\begin_layout Standard
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Write something here.
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A sample citation is
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\begin_inset CommandInset citation
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LatexCommand citet
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key "Lam94"
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\end_inset
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.
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\end_layout
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\begin_layout Section
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R code chunks
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\end_layout
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\begin_layout Standard
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Press
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\begin_inset Info
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type "shortcut"
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arg "ert-insert"
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\end_inset
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and input R code chunks which will be compiled with the
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\series bold
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knitr
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\series default
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package (
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\begin_inset Flex URL
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status collapsed
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\begin_layout Plain Layout
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http://yihui.name/knitr/
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\end_layout
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\end_inset
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).
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\end_layout
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\begin_layout Standard
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<sample-chunk, echo=TRUE>>=
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\end_layout
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\begin_layout Plain Layout
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x=1:10
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\end_layout
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\begin_layout Plain Layout
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rev(x)
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\end_layout
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\begin_layout Plain Layout
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summary(x)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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You can also plot your data; see Figure
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\begin_inset CommandInset ref
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LatexCommand ref
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reference "fig:sample-figure"
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\end_inset
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for example.
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\end_layout
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\begin_layout Standard
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\begin_inset Float figure
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placement tbph
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wide false
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sideways false
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status open
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\begin_layout Plain Layout
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\begin_inset ERT
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status open
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\begin_layout Plain Layout
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<<sample-figure, fig.width=5, fig.height=3, out.width='.4
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\backslash
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\backslash
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linewidth', fig.align='center', dev=c('pdf','postscript')>>=
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\end_layout
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\begin_layout Plain Layout
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par(mar = c(4,4,.1,.1))
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\end_layout
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\begin_layout Plain Layout
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plot(x, pch=19, col=1:10)
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\end_layout
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\begin_layout Plain Layout
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@
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Plain Layout
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\begin_inset Caption
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\begin_layout Plain Layout
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A sample figure.
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\begin_inset CommandInset label
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LatexCommand label
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name "fig:sample-figure"
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\end_inset
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\end_layout
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\end_inset
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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\begin_inset Note Note
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status open
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\begin_layout Plain Layout
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When you insert a BibTeX bibliography here, do not use any bib styles.
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The R Journal has declared the style to be
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\begin_inset Quotes eld
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\end_inset
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abbrvnat
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\begin_inset Quotes erd
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\end_inset
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.
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Standard
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\begin_inset CommandInset bibtex
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LatexCommand bibtex
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bibfiles "biblio"
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\end_inset
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\end_layout
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\begin_layout Address
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Author A
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\begin_inset Newline newline
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\end_inset
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Press
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\begin_inset Info
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type "shortcut"
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arg "newline-insert newline"
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\end_inset
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to input
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\begin_inset Newline newline
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\end_inset
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address here
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\begin_inset Newline newline
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\end_inset
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\begin_inset Flex Email
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status open
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\begin_layout Plain Layout
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author.a@email
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\end_layout
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\end_inset
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\end_layout
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\begin_layout Address
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Author B
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\begin_inset Newline newline
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\end_inset
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\begin_inset Flex Email
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status open
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\begin_layout Plain Layout
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author.b@email
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\end_layout
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\end_inset
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\end_layout
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\end_body
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\end_document
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