lyx_mirror/lib/templates/Articles/Copernicus_Publications_Manuscript_Preparation.lyx
Scott Kostyshak a15303b938 Update format of docs using LyX binary
Especially after the change to use semantic linefeeds (7b23c76b),
the diffs are large and it's hard to figure out what diff is the
result of the linefeed change and which diff is the result of an
edit.

By updating the docs, it will make the edits easier to understand
from the diff.

This commit used the LyX binary to write the new .lyx files since
lyx2lyx does not apply semantic linefeeds.

I used the following command:

  ./development/tools/updatedocs.py [path to 'lyx' binary]

A few documents were not updated (e.g., the command sequence used
failed because a dialog about a missing dependency was shown).

I did not update Additional.lyx for any language since it is
undergoing changes. I also didn't change anything in doc/fr since JP
is working on some of those. I also didn't change doc/ru since it
appears Yuriy already updated those.
2022-12-11 11:16:28 -05:00

670 lines
10 KiB
Plaintext

#LyX 2.4 created this file. For more info see https://www.lyx.org/
\lyxformat 612
\begin_document
\begin_header
\save_transient_properties true
\origin /systemlyxdir/templates/Articles/
\textclass copernicus
\use_default_options true
\maintain_unincluded_children no
\language english
\language_package default
\inputencoding utf8
\fontencoding auto
\font_roman "default" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_roman_osf false
\font_sans_osf false
\font_typewriter_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command default
\index_command default
\float_placement class
\float_alignment class
\paperfontsize default
\spacing single
\use_hyperref false
\papersize default
\use_geometry false
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 1
\use_package mathdots 1
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine natbib
\cite_engine_type authoryear
\biblio_style authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 1
\use_minted 0
\use_lineno 0
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle default
\tablestyle default
\tracking_changes false
\output_changes false
\change_bars false
\postpone_fragile_content false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\docbook_table_output 0
\docbook_mathml_prefix 1
\end_header
\begin_body
\begin_layout Standard
\begin_inset Note Note
status open
\begin_layout Plain Layout
Copernicus Publications Manuscript Preparation Template for LaTeX Submissions
\end_layout
\begin_layout Plain Layout
---------------------------------
\end_layout
\begin_layout Plain Layout
This template should be used for copernicus.cls
\end_layout
\begin_layout Plain Layout
The class file and some style files are bundled in the Copernicus Latex Package,
which can be downloaded from the different journal webpages.
\end_layout
\begin_layout Plain Layout
For further assistance please contact Copernicus Publications at:
production@copernicus.org
\end_layout
\begin_layout Plain Layout
https://publications.copernicus.org/for_authors/manuscript_preparation.html
\end_layout
\begin_layout Plain Layout
Please use the following documentclass and journal abbreviations for discussion papers and final revised papers.
\end_layout
\end_inset
\end_layout
\begin_layout Title
TEXT
\end_layout
\begin_layout Author
Your Name
\end_layout
\begin_layout Affil
\begin_inset Argument 1
status open
\begin_layout Plain Layout
\end_layout
\end_inset
ADDRESS
\begin_inset Note Note
status open
\begin_layout Plain Layout
Enter the authors address here
\end_layout
\end_inset
\end_layout
\begin_layout Affil
ADDRESS
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
Enter the authors address here
\end_layout
\end_inset
\end_layout
\begin_layout Running Title
TEXT
\end_layout
\begin_layout RunningAuthor
TEXT
\end_layout
\begin_layout Correspondence
NAME (EMAIL)
\end_layout
\begin_layout Received
\end_layout
\begin_layout Pubdiscuss
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
only important for two-stage journals
\end_layout
\end_inset
\end_layout
\begin_layout Revised
\end_layout
\begin_layout Published
\end_layout
\begin_layout Standard
\begin_inset ERT
status open
\begin_layout Plain Layout
%% Dates above will be inserted by Copernicus Publications during the typesetting process.
\end_layout
\end_inset
\end_layout
\begin_layout FirstPage
1
\end_layout
\begin_layout Abstract
TEXT
\end_layout
\begin_layout Copyrightstatement
TEXT
\end_layout
\begin_layout Introduction
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
\backslash
introduction[modified heading if necessary]
\end_layout
\end_inset
\end_layout
\begin_layout Standard
TEXT
\end_layout
\begin_layout Section
HEADING
\end_layout
\begin_layout Standard
TEXT
\end_layout
\begin_layout Subsection
HEADING
\end_layout
\begin_layout Standard
TEXT
\end_layout
\begin_layout Subsubsection
HEADING
\end_layout
\begin_layout Standard
TEXT
\end_layout
\begin_layout Conclusions
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
\backslash
conclusions[modified heading if necessary]
\end_layout
\end_inset
\end_layout
\begin_layout Standard
TEXT
\end_layout
\begin_layout Standard
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
The following commands are for the statements about the availability of data sets and/or software code corresponding to the manuscript.
\end_layout
\begin_layout Plain Layout
It is strongly recommended to make use of these sections in case data sets and/or software code have been part of your research the article is based on.
\end_layout
\end_inset
\end_layout
\begin_layout CodeAvailability
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
use this section when having only software code available
\end_layout
\end_inset
\end_layout
\begin_layout DataAvailability
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
use this section when having only data sets available
\end_layout
\end_inset
\end_layout
\begin_layout CodeAndDataAvailability
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
use this section when having data sets and software code available
\end_layout
\end_inset
\end_layout
\begin_layout SampleAvailability
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
use this section when having geoscientific samples available
\end_layout
\end_inset
\end_layout
\begin_layout Standard
\begin_inset Flex Appendix
status open
\begin_layout Plain Layout
\end_layout
\begin_layout Section Appendix
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
Appendix A
\end_layout
\end_inset
\end_layout
\begin_layout Subsection Appendix
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
Appendix A1,
A2,
etc.
\end_layout
\end_inset
\end_layout
\begin_layout Plain Layout
\begin_inset Note Comment
status collapsed
\begin_layout Plain Layout
Regarding figures and tables in appendices,
the following two options are possible depending on your general handling of figures and tables in the manuscript environment:
\end_layout
\begin_layout Plain Layout
Option 1:
If you sorted all figures and tables into the sections of the text,
please also sort the appendix figures and appendix tables into the respective appendix sections.
\end_layout
\begin_layout Plain Layout
They will be correctly named automatically.
\end_layout
\begin_layout Plain Layout
Option 2:
If you put all figures after the reference list,
please insert appendix tables and figures after the normal tables and figures.
\end_layout
\begin_layout Plain Layout
To rename them correctly to A1,
A2,
etc.,
please add the following commands in front of them:
\end_layout
\end_inset
\end_layout
\end_inset
\end_layout
\begin_layout AuthorContribution
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
it is strongly recommended to make use of this section
\end_layout
\end_inset
\end_layout
\begin_layout CompetingInterests
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
this section is mandatory even if you declare that no competing interests are present
\end_layout
\end_inset
\end_layout
\begin_layout Disclaimer
TEXT
\begin_inset Note Note
status collapsed
\begin_layout Plain Layout
optional section
\end_layout
\end_inset
\end_layout
\begin_layout Acknowledgements
TEXT
\end_layout
\begin_layout Standard
\begin_inset Note Comment
status collapsed
\begin_layout Plain Layout
REFERENCES
\end_layout
\begin_layout Plain Layout
The reference list is compiled as follows:
\end_layout
\end_inset
\end_layout
\begin_layout Bibliography
\begin_inset CommandInset bibitem
LatexCommand bibitem
label "AUTHOR(YEAR)"
key "LABEL1"
literal "false"
\end_inset
REFERENCE 1
\end_layout
\begin_layout Bibliography
\begin_inset CommandInset bibitem
LatexCommand bibitem
label "AUTHOR(YEAR)"
key "LABEL2"
literal "false"
\end_inset
REFERENCE 2
\end_layout
\begin_layout Standard
\begin_inset Note Comment
status open
\begin_layout Plain Layout
Since the Copernicus LaTeX package includes the BibTeX style file copernicus.bst,
\end_layout
\begin_layout Plain Layout
authors experienced with BibTeX only have to include the following two lines:
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
\backslash
bibliographystyle{copernicus}
\end_layout
\begin_layout Plain Layout
\backslash
bibliography{example.bib}
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
URLs and DOIs can be entered in your BibTeX file as:
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
URL = {http://www.xyz.org/~jones/idx_g.htm}
\end_layout
\begin_layout Plain Layout
DOI = {10.5194/xyz}
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
LITERATURE CITATIONS
\end_layout
\begin_layout Plain Layout
%
\end_layout
\begin_layout Plain Layout
command & example result
\end_layout
\begin_layout Plain Layout
\backslash
citet{jones90}| & Jones et al.
(1990)
\end_layout
\begin_layout Plain Layout
\backslash
citep{jones90}| & (Jones et al.,
1990)
\end_layout
\begin_layout Plain Layout
\backslash
citep{jones90,jones93}| & (Jones et al.,
1990,
1993)
\end_layout
\begin_layout Plain Layout
\backslash
citep[p.~32]{jones90}| & (Jones et al.,
1990,
p.~32)
\end_layout
\begin_layout Plain Layout
\backslash
citep[e.g.,][]{jones90}| & (e.g.,
Jones et al.,
1990)
\end_layout
\begin_layout Plain Layout
\backslash
citep[e.g.,][p.~32]{jones90}| & (e.g.,
Jones et al.,
1990,
p.~32)
\end_layout
\begin_layout Plain Layout
\backslash
citeauthor{jones90}| & Jones et al.
\end_layout
\begin_layout Plain Layout
\backslash
citeyear{jones90}| & 1990
\end_layout
\end_inset
\end_layout
\end_body
\end_document