Scott Kostyshak 4d9f620349 More elegant knitr support and bug fix ...

Implement a more simple and elegant integration of the R package knitr. Now,
lyxknitr.R does not need to move or copy files at all.

This also fixes a bug: when /tmp was on a different file system (e.g.
encrypted home), lyxknitr.R failed to move files to /tmp because it relied on
R's 'file.rename' function, which in turn relied on the rename function in
<stdio.h>, which was failing with the EXDEV errno.

Patch from Yihui Xie.

2012-10-06 19:54:08 -04:00

..

aa.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

aapaper.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

aapaper.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

aastex.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

achemso.layout

- layout files: rename flex insets to fix #7630 for all layouts

2011-06-16 14:32:53 +00:00

acmsiggraph.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

AEA.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu_stdclass.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu_stdcounters.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu_stdlists.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu_stdsections.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu_stdtitle.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agu-dtd.layout

Update all layouts to format 35.

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agums.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

aguplus.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

agutex.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

amsart.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

amsbook.layout

- example files: save in current format (still not finished)

2011-06-14 20:56:51 +00:00

amsdefs.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

apa.layout

branch: fix for APA layout

2012-07-03 20:43:49 +02:00

arab-article.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

armenian-article.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

article-beamer.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

article.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

beamer.layout

Merge branch '2.0.x' of git.lyx.org:lyx into 2.0.x

2012-03-28 22:51:50 +02:00

book.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

braille.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

broadway.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

chess.layout

- example files: save in current file format (more to come)

2011-06-14 16:18:57 +00:00

cl2emult.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

ctex-article.layout

ctex layout files: add required packages and set missing SVN EOL style

2011-11-24 21:59:22 +00:00

ctex-book.layout

ctex layout files: add required packages and set missing SVN EOL style

2011-11-24 21:59:22 +00:00

ctex-report.layout

ctex layout files: add required packages and set missing SVN EOL style

2011-11-24 21:59:22 +00:00

customHeadersFooters.module

- initials.module: update description text

2011-09-06 02:48:19 +00:00

db_lyxmacros.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdcharstyles.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdclass.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdcounters.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdlayouts.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdlists.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdsections.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdstarsections.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdstruct.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

db_stdtitle.inc

Update all layouts to format 35.

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dinbrief.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

docbook-book.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

docbook-chapter.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

docbook-section.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

docbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

doublecol-new.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

dtk.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

ectaart.layout

- layout files: rename flex insets to fix #7630 for all layouts

2011-06-16 14:32:53 +00:00

egs.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

elsart.layout

- layout files: rename flex insets to fix #7630 for all layouts

2011-06-16 14:32:53 +00:00

elsarticle.layout

for branch: elsarticle already provides refstyle

2012-07-02 22:18:42 +02:00

endnotes.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

entcs.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

enumitem.module

Fix #8201: our translation mechanism chokes on the character "

2012-06-30 19:27:24 +02:00

eqs-within-sections.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

europecv.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

extarticle.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

extbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

extletter.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

extreport.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

figs-within-sections.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

fix-cm.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

fixltx2e.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

foils.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

foottoend.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

frletter.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

g-brief2.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

g-brief.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

hanging.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

heb-article.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

heb-letter.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

hollywood.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

IEEEtran.layout

- layout files: rename flex insets to fix #7630 for all layouts

2011-06-16 14:32:53 +00:00

ijmpc.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

ijmpd.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

initials.module

- initials.module: update description text

2011-09-06 02:48:19 +00:00

iopart.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

isprs.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jarticle.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jasatex.layout

new layout and template file for articles in the Journal of the Acoustical Society of America (JASA)

2011-12-20 00:52:36 +00:00

jbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jgrga.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jreport.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jsarticle.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jsbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

jss.layout

Fix incompatibility between jss.layout and Sweave (see bug 7555).

2011-06-22 09:30:57 +00:00

kluwer.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

knitr.module

More elegant knitr support and bug fix

2012-10-06 19:54:08 -04:00

latex8.layout

Minor tweaks.

2011-06-16 13:13:58 +00:00

letter.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

lettre.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

lilypond.module

No need to spellcheck lilypond code snippets.

2011-04-17 18:30:34 +00:00

linguistics.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

literate-article.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

literate-book.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

literate-report.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

literate-scrap.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

llncs.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

logicalmkup.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

ltugboat.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

lyxmacros.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

memoir.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

minimalistic.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

moderncv.layout

- moderncv.layout: add missing separator style

2012-01-21 12:17:39 +00:00

mwart.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

mwbk.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

mwrep.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

noweb.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

numarticle.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

numreport.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

numrevtex.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

paper.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

powerdot.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

recipebook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

report.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

revtex4.layout

layout files: backport Julien's fixes (that don't change strings) to branch

2011-06-20 23:56:26 +00:00

revtex.layout

Minor tweaks.

2011-06-16 13:13:58 +00:00

scrartcl.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

scrarticle-beamer.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

scrbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

scrclass.inc

Group correctly Koma Book environments inside environment combo-box listing.

2011-09-05 17:51:32 +00:00

scrlettr.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

scrlttr2.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

scrreprt.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

seminar.layout

seminar.layout: new version from Günter Milde (bug #7624)

2012-05-18 21:29:21 +02:00

siamltex.layout

Add DefaultStyle to siamltex.layout (bug #8194)

2012-06-10 11:45:41 +02:00

sigplanconf.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

simplecv.layout

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

singlecol-new.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

singlecol.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

slides.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

spie.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

stdcharstyles.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdciteformats.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdclass.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

stdcounters.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdcustom.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdfloats.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

stdinsets.inc

Use InsetLayout to style the XHTML output.

2012-04-17 09:28:28 -04:00

stdlayouts.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

stdletter.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdlists.inc

layout file: remove unused strings and some whitespace adjustments

2011-12-10 21:50:17 +00:00

stdlyxlist.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdrefprefix.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

stdsections.inc

layout files: backport Julien's fixes (that don't change strings) to branch

2011-06-20 23:56:26 +00:00

stdstarsections.inc

layout files: backport Julien's fixes (that don't change strings) to branch

2011-06-20 23:56:26 +00:00

stdstruct.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

stdtitle.inc

remove extra whitespace

2011-04-17 18:52:49 +00:00

svcommon.inc

springer template files: backport changes from trunk, support for all 3 recent Springer document classes, new and revised set of template files, fixes bug #7301

2011-09-22 02:25:11 +00:00

svglobal3.layout

springer template files: backport changes from trunk, support for all 3 recent Springer document classes, new and revised set of template files, fixes bug #7301

2011-09-22 02:25:11 +00:00

svglobal.layout

- layout files: rename flex insets to fix #7630 for all layouts

2011-06-16 14:32:53 +00:00

svjog.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

svmono.layout

springer template files: backport changes from trunk, support for all 3 recent Springer document classes, new and revised set of template files, fixes bug #7301

2011-09-22 02:25:11 +00:00

svmult.layout

springer template files: backport changes from trunk, support for all 3 recent Springer document classes, new and revised set of template files, fixes bug #7301

2011-09-22 02:25:11 +00:00

svprobth.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

sweave.module

sweave.module: more precise description text

2011-09-06 03:15:07 +00:00

tabs-within-sections.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

tarticle.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

tbook.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-ams-bytype.inc

Backport fix for #7611.

2012-05-03 15:34:37 -04:00

theorems-ams-bytype.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-ams-extended-bytype.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-ams-extended.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-ams.inc

Backport fix for #7611.

2012-05-03 15:34:37 -04:00

theorems-ams.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-bytype.inc

Backport fix for #7611.

2012-05-03 15:34:37 -04:00

theorems-bytype.module

babel knows \proofname already (bug #7513)

2011-05-14 13:46:34 +00:00

theorems-case.inc

Backport fix for #7611.

2012-05-03 15:34:37 -04:00

theorems-chap-bytype.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-chap.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-named.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-order.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-proof-std.inc

Fix typo in theorems-proof-std.

2011-06-29 19:20:51 +00:00

theorems-proof.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-refprefix.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-sec-bytype.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-sec.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-starred-equivalents.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-starred.inc

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-starred.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-std.module

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

theorems-without-preamble.inc

Backport fix for bug #7883 from Jean-Pierre: Make strings

2011-11-29 19:50:25 +00:00

theorems.inc

Backport fix for #7611.

2012-05-03 15:34:37 -04:00

treport.layout

Update all layouts to format 35.

2011-04-15 02:51:32 +00:00

tufte-book.layout

- tufte-book.layout: fix a lyX warning about uninitialized counter

2011-08-28 16:53:56 +00:00

tufte-handout.layout

layout files: backport Julien's fixes (that don't change strings) to branch

2011-06-20 23:56:26 +00:00