Added basic OpenGL scenegraph system

- rotate/scalable view widget
 - volumetric data item

opengl/GLGraphicsItem.py

@@ -0,0 +1,60 @@
+from pyqtgraph.Qt import QtGui, QtCore
+
+class GLGraphicsItem(QtCore.QObject):
+    def __init__(self, parentItem=None):
+        QtCore.QObject.__init__(self)
+        self.__parent = None
+        self.__view = None
+        self.__children = set()
+        self.setParentItem(parentItem)
+        self.setDepthValue(0)
+        
+    def setParentItem(self, item):
+        if self.__parent is not None:
+            self.__parent.__children.remove(self)
+        if item is not None:
+            item.__children.add(self)
+        self.__parent = item
+        
+    def parentItem(self):
+        return self.__parent
+        
+    def childItems(self):
+        return list(self.__children)
+        
+    def _setView(self, v):
+        self.__view = v
+        
+    def view(self):
+        return self.__view
+        
+    def setDepthValue(self, value):
+        """
+        Sets the depth value of this item. Default is 0.
+        This controls the order in which items are drawn--those with a greater depth value will be drawn later.
+        Items with negative depth values are drawn before their parent.
+        (This is analogous to QGraphicsItem.zValue)
+        The depthValue does NOT affect the position of the item or the values it imparts to the GL depth buffer.
+        '"""
+        self.__depthValue = value
+        
+    def depthValue(self):
+        """Return the depth value of this item. See setDepthValue for mode information."""
+        return self.__depthValue
+        
+    def initializeGL(self):
+        """
+        Called after an item is added to a GLViewWidget. 
+        The widget's GL context is made current before this method is called.
+        (So this would be an appropriate time to generate lists, upload textures, etc.)
+        """
+        pass
+    
+    def paint(self):
+        """
+        Called by the GLViewWidget to draw this item.
+        It is the responsibility of the item to set up its own modelview matrix,
+        but the caller will take care of pushing/popping.
+        """
+        pass
+        

opengl/GLViewWidget.py

@@ -0,0 +1,199 @@
+from pyqtgraph.Qt import QtCore, QtGui, QtOpenGL
+from OpenGL.GL import *
+import numpy as np
+
+Vector = QtGui.QVector3D
+
+class GLViewWidget(QtOpenGL.QGLWidget):
+    """
+    Basic widget for displaying 3D data
+        - Rotation/scale controls
+        - Axis/grid display
+        - Export options
+
+    """
+    def __init__(self, parent=None):
+        QtOpenGL.QGLWidget.__init__(self, parent)
+        self.opts = {
+            'center': Vector(0,0,0),  ## will always appear at the center of the widget
+            'distance': 10.0,         ## distance of camera from center
+            'fov':  60,               ## horizontal field of view in degrees
+            'elevation':  30,         ## camera's angle of elevation in degrees
+            'azimuth': 45,            ## camera's azimuthal angle in degrees 
+                                      ## (rotation around z-axis 0 points along x-axis)
+        }
+        self.items = []
+
+    def addItem(self, item):
+        self.items.append(item)
+        if hasattr(item, 'initializeGL'):
+            self.makeCurrent()
+            item.initializeGL()
+        item._setView(self)
+        #print "set view", item, self, item.view()
+        self.updateGL()
+        
+    def initializeGL(self):
+        glClearColor(0.0, 0.0, 0.0, 0.0)
+        glEnable(GL_DEPTH_TEST)
+
+        glEnable( GL_ALPHA_TEST )
+        self.resizeGL(self.width(), self.height())
+        self.generateAxes()
+        #self.generatePoints()
+        
+    def resizeGL(self, w, h):
+        glViewport(0, 0, w, h)
+        #self.updateGL()
+
+    def setProjection(self):
+        ## Create the projection matrix
+        glMatrixMode(GL_PROJECTION)
+        glLoadIdentity()
+        w = self.width()
+        h = self.height()
+        dist = self.opts['distance']
+        fov = self.opts['fov']
+        
+        nearClip = dist * 0.001
+        farClip = dist * 1000.
+        
+        r = nearClip * np.tan(fov)
+        t = r * h / w
+        glFrustum( -r, r, -t, t, nearClip, farClip)
+        
+    def setModelview(self):
+        glMatrixMode(GL_MODELVIEW)
+        glLoadIdentity()
+        glTranslatef( 0.0, 0.0, -self.opts['distance'])
+        glRotatef(self.opts['elevation']-90, 1, 0, 0)
+        glRotatef(self.opts['azimuth']+90, 0, 0, -1)
+        center = self.opts['center']
+        glTranslatef(center.x(), center.y(), center.z())
+        
+        
+    def paintGL(self):
+        self.setProjection()
+        self.setModelview()
+
+        glClear( GL_DEPTH_BUFFER_BIT | GL_COLOR_BUFFER_BIT )
+        glDisable( GL_DEPTH_TEST )
+        #print "draw list:", self.axisList
+        glCallList(self.axisList)  ## draw axes
+        #glCallList(self.pointList)
+        #self.drawPoints()
+        #self.drawAxes()
+        
+        self.drawItemTree()
+        
+    def drawItemTree(self, item=None):
+        if item is None:
+            items = [x for x in self.items if x.parentItem() is None]
+        else:
+            items = item.childItems()
+            items.append(item)
+        items.sort(lambda a,b: cmp(a.depthValue(), b.depthValue()))
+        for i in items:
+            if i is item:
+                glMatrixMode(GL_MODELVIEW)
+                glPushMatrix()
+                i.paint()
+                glMatrixMode(GL_MODELVIEW)
+                glPopMatrix()
+            else:
+                self.drawItemTree(i)
+            
+        
+    def cameraPosition(self):
+        """Return current position of camera based on center, dist, elevation, and azimuth"""
+        center = self.opts['center']
+        dist = self.opts['distance']
+        elev = self.opts['elevation'] * np.pi/180.
+        azim = self.opts['azimuth'] * np.pi/180.
+        
+        pos = Vector(
+            center.x() + dist * np.cos(elev) * np.cos(azim),
+            center.y() + dist * np.cos(elev) * np.sin(azim),
+            center.z() + dist * np.sin(elev)
+        )
+        
+        return pos
+        
+        
+
+    def generateAxes(self):
+        self.axisList = glGenLists(1)
+        glNewList(self.axisList, GL_COMPILE)
+
+        #glShadeModel(GL_FLAT)
+        #glFrontFace(GL_CCW)
+        #glEnable( GL_LIGHT_MODEL_TWO_SIDE )
+        glBlendFunc(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA)
+        glEnable( GL_BLEND )
+        glEnable( GL_ALPHA_TEST )
+        #glAlphaFunc( GL_ALWAYS,0.5 )
+        glEnable( GL_POINT_SMOOTH )
+        glDisable( GL_DEPTH_TEST )
+        glBegin( GL_LINES )
+        
+        glColor4f(1, 1, 1, .3)
+        for x in range(-10, 11):
+            glVertex3f(x, -10, 0)
+            glVertex3f(x,  10, 0)
+        for y in range(-10, 11):
+            glVertex3f(-10, y, 0)
+            glVertex3f( 10, y, 0)
+        
+        
+        glColor4f(0, 1, 0, .6)  # z is green
+        glVertex3f(0, 0, 0)
+        glVertex3f(0, 0, 5)
+
+        glColor4f(1, 1, 0, .6)  # y is yellow
+        glVertex3f(0, 0, 0)
+        glVertex3f(0, 5, 0)
+
+        glColor4f(0, 0, 1, .6)  # x is blue
+        glVertex3f(0, 0, 0)
+        glVertex3f(5, 0, 0)
+        glEnd()
+        glEndList()
+        
+    def generatePoints(self):
+        self.pointList = glGenLists(1)
+        glNewList(self.pointList, GL_COMPILE)
+        width = 7
+        alpha = 0.02
+        n = 40
+        glPointSize( width )
+        glBegin(GL_POINTS)
+        for x in range(-n, n+1):
+            r = (n-x)/(2.*n)
+            glColor4f(r, r, r, alpha)
+            for y in range(-n, n+1):
+                for z in range(-n, n+1):
+                    glVertex3f(x, y, z)
+        glEnd()
+        glEndList()
+        
+        
+    def mousePressEvent(self, ev):
+        self.mousePos = ev.pos()
+        
+    def mouseMoveEvent(self, ev):
+        diff = ev.pos() - self.mousePos
+        self.mousePos = ev.pos()
+        self.opts['azimuth'] -= diff.x()
+        self.opts['elevation'] = np.clip(self.opts['elevation'] + diff.y(), -90, 90)
+        #print self.opts['azimuth'], self.opts['elevation']
+        self.updateGL()
+        
+    def mouseReleaseEvent(self, ev):
+        pass
+        
+    def wheelEvent(self, ev):
+        self.opts['distance'] *= 0.999**ev.delta()
+        self.updateGL()
+
+
+

opengl/__init__.py

@@ -0,0 +1,23 @@
+from GLViewWidget import GLViewWidget
+
+import os
+def importAll(path):
+    d = os.path.join(os.path.split(__file__)[0], path)
+    files = []
+    for f in os.listdir(d):
+        if os.path.isdir(os.path.join(d, f)):
+            files.append(f)
+        elif f[-3:] == '.py' and f != '__init__.py':
+            files.append(f[:-3])
+        
+    for modName in files:
+        mod = __import__(path+"."+modName, globals(), locals(), fromlist=['*'])
+        if hasattr(mod, '__all__'):
+            names = mod.__all__
+        else:
+            names = [n for n in dir(mod) if n[0] != '_']
+        for k in names:
+            if hasattr(mod, k):
+                globals()[k] = getattr(mod, k)
+
+importAll('items')

opengl/items/GLBoxItem.py

@@ -0,0 +1,47 @@
+from OpenGL.GL import *
+from .. GLGraphicsItem import GLGraphicsItem
+
+__all__ = ['GLBoxItem']
+
+class GLBoxItem(GLGraphicsItem):
+    def paint(self):
+        glBlendFunc(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA)
+        glEnable( GL_BLEND )
+        glEnable( GL_ALPHA_TEST )
+        #glAlphaFunc( GL_ALWAYS,0.5 )
+        glEnable( GL_POINT_SMOOTH )
+        glDisable( GL_DEPTH_TEST )
+        glBegin( GL_LINES )
+        
+        glColor4f(1, 1, 1, .3)
+        w = 10
+        glVertex3f(-w, -w, -w)
+        glVertex3f(-w, -w,  w)
+        glVertex3f( w, -w, -w)
+        glVertex3f( w, -w,  w)
+        glVertex3f(-w,  w, -w)
+        glVertex3f(-w,  w,  w)
+        glVertex3f( w,  w, -w)
+        glVertex3f( w,  w,  w)
+
+        glVertex3f(-w, -w, -w)
+        glVertex3f(-w,  w, -w)
+        glVertex3f( w, -w, -w)
+        glVertex3f( w,  w, -w)
+        glVertex3f(-w, -w,  w)
+        glVertex3f(-w,  w,  w)
+        glVertex3f( w, -w,  w)
+        glVertex3f( w,  w,  w)
+        
+        glVertex3f(-w, -w, -w)
+        glVertex3f( w, -w, -w)
+        glVertex3f(-w,  w, -w)
+        glVertex3f( w,  w, -w)
+        glVertex3f(-w, -w,  w)
+        glVertex3f( w, -w,  w)
+        glVertex3f(-w,  w,  w)
+        glVertex3f( w,  w,  w)
+        
+        glEnd()
+        
+        

opengl/items/GLVolumeItem.py

@@ -0,0 +1,179 @@
+from OpenGL.GL import *
+from .. GLGraphicsItem import GLGraphicsItem
+from pyqtgraph.Qt import QtGui
+import numpy as np
+
+__all__ = ['GLVolumeItem']
+
+class GLVolumeItem(GLGraphicsItem):
+    def initializeGL(self):
+        n = 128
+        self.data = np.random.randint(0, 255, size=4*n**3).astype(np.uint8).reshape((n,n,n,4))
+        self.data[...,3] *= 0.1
+        for i in range(n):
+            self.data[i,:,:,0] = i*256./n
+        glEnable(GL_TEXTURE_3D)
+        self.texture = glGenTextures(1)
+        glBindTexture(GL_TEXTURE_3D, self.texture)
+        #glTexImage3D( GLenum target, GLint level, GLint internalformat, GLsizei width, GLsizei height, GLsizei depth, GLint border, GLenum format, GLenum type, void *data );
+        glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_MIN_FILTER, GL_LINEAR)
+        glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_MAG_FILTER, GL_LINEAR)
+        glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_WRAP_S, GL_CLAMP_TO_BORDER)
+        glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_WRAP_T, GL_CLAMP_TO_BORDER)
+        glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_WRAP_R, GL_CLAMP_TO_BORDER)
+        #glTexParameteri(GL_TEXTURE_3D, GL_TEXTURE_BORDER_COLOR, )  ## black/transparent by default
+        glTexImage3D(GL_TEXTURE_3D, 0, GL_RGBA, n, n, n, 0, GL_RGBA, GL_UNSIGNED_BYTE, self.data)
+        glDisable(GL_TEXTURE_3D)
+        
+        self.lists = {}
+        for ax in [0,1,2]:
+            for d in [-1, 1]:
+                l = glGenLists(1)
+                self.lists[(ax,d)] = l
+                glNewList(l, GL_COMPILE)
+                self.drawVolume(ax, d)
+                glEndList()
+
+                
+    def paint(self):
+        
+        glEnable(GL_TEXTURE_3D)
+        glBindTexture(GL_TEXTURE_3D, self.texture)
+        
+        glDisable(GL_DEPTH_TEST)
+        #glDisable(GL_CULL_FACE)
+        glBlendFunc(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA)
+        glEnable( GL_BLEND )
+        glEnable( GL_ALPHA_TEST )
+
+        view = self.view()
+        cam = view.cameraPosition()
+        cam = np.array([cam.x(), cam.y(), cam.z()])
+        ax = np.argmax(abs(cam))
+        d = 1 if cam[ax] > 0 else -1
+        glCallList(self.lists[(ax,d)])  ## draw axes
+        glDisable(GL_TEXTURE_3D)
+                
+    def drawVolume(self, ax, d):
+        slices = 256
+        N = 5
+        
+        imax = [0,1,2]
+        imax.remove(ax)
+        
+        tp = [[0,0,0],[0,0,0],[0,0,0],[0,0,0]]
+        vp = [[0,0,0],[0,0,0],[0,0,0],[0,0,0]]
+        tp[0][imax[0]] = 0
+        tp[0][imax[1]] = 0
+        tp[1][imax[0]] = 1
+        tp[1][imax[1]] = 0
+        tp[2][imax[0]] = 1
+        tp[2][imax[1]] = 1
+        tp[3][imax[0]] = 0
+        tp[3][imax[1]] = 1
+        
+        vp[0][imax[0]] = -N
+        vp[0][imax[1]] = -N
+        vp[1][imax[0]] = N
+        vp[1][imax[1]] = -N
+        vp[2][imax[0]] = N
+        vp[2][imax[1]] = N
+        vp[3][imax[0]] = -N
+        vp[3][imax[1]] = N
+        r = range(slices)
+        if d == -1:
+            r = r[::-1]
+            
+        glBegin(GL_QUADS)
+        for i in r:
+            z = float(i)/(slices-1.)
+            w = float(i)*10./(slices-1.) - 5.
+            
+            tp[0][ax] = z
+            tp[1][ax] = z
+            tp[2][ax] = z
+            tp[3][ax] = z
+            
+            vp[0][ax] = w
+            vp[1][ax] = w
+            vp[2][ax] = w
+            vp[3][ax] = w
+            
+            
+            glTexCoord3f(*tp[0])
+            glVertex3f(*vp[0])
+            glTexCoord3f(*tp[1])
+            glVertex3f(*vp[1])
+            glTexCoord3f(*tp[2])
+            glVertex3f(*vp[2])
+            glTexCoord3f(*tp[3])
+            glVertex3f(*vp[3])
+        glEnd()
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        ## Interesting idea:
+        ## remove projection/modelview matrixes, recreate in texture coords. 
+        ## it _sorta_ works, but needs tweaking.
+        #mvm = glGetDoublev(GL_MODELVIEW_MATRIX)
+        #pm = glGetDoublev(GL_PROJECTION_MATRIX)
+        #m = QtGui.QMatrix4x4(mvm.flatten()).inverted()[0]
+        #p = QtGui.QMatrix4x4(pm.flatten()).inverted()[0]
+        
+        #glMatrixMode(GL_PROJECTION)
+        #glPushMatrix()
+        #glLoadIdentity()
+        #N=1
+        #glOrtho(-N,N,-N,N,-100,100)
+        
+        #glMatrixMode(GL_MODELVIEW)
+        #glLoadIdentity()
+        
+        
+        #glMatrixMode(GL_TEXTURE)
+        #glLoadIdentity()
+        #glMultMatrixf(m.copyDataTo())
+        
+        #view = self.view()
+        #w = view.width()
+        #h = view.height()
+        #dist = view.opts['distance']
+        #fov = view.opts['fov']
+        #nearClip = dist * .1
+        #farClip = dist * 5.
+        #r = nearClip * np.tan(fov)
+        #t = r * h / w
+        
+        #p = QtGui.QMatrix4x4()
+        #p.frustum( -r, r, -t, t, nearClip, farClip)
+        #glMultMatrixf(p.inverted()[0].copyDataTo())
+        
+        
+        #glBegin(GL_QUADS)
+        
+        #M=1
+        #for i in range(500):
+            #z = i/500.
+            #w = -i/500.
+            #glTexCoord3f(-M, -M, z)
+            #glVertex3f(-N, -N, w)
+            #glTexCoord3f(M, -M, z)
+            #glVertex3f(N, -N, w)
+            #glTexCoord3f(M, M, z)
+            #glVertex3f(N, N, w)
+            #glTexCoord3f(-M, M, z)
+            #glVertex3f(-N, N, w)
+        #glEnd()
+        #glDisable(GL_TEXTURE_3D)
+
+        #glMatrixMode(GL_PROJECTION)
+        #glPopMatrix()
+        
+        
+