Added image analysis example
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@ -26,6 +26,7 @@ examples = OrderedDict([
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('Crosshair / Mouse interaction', 'crosshair.py'),
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('Crosshair / Mouse interaction', 'crosshair.py'),
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('Data Slicing', 'DataSlicing.py'),
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('Data Slicing', 'DataSlicing.py'),
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('Plot Customization', 'customPlot.py'),
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('Plot Customization', 'customPlot.py'),
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('Image Analysis', 'imageAnalysis.py'),
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('Dock widgets', 'dockarea.py'),
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('Dock widgets', 'dockarea.py'),
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('Console', 'ConsoleWidget.py'),
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('Console', 'ConsoleWidget.py'),
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('Histograms', 'histogram.py'),
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('Histograms', 'histogram.py'),
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examples/imageAnalysis.py
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98
examples/imageAnalysis.py
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@ -0,0 +1,98 @@
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# -*- coding: utf-8 -*-
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"""
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Demonstrates common image analysis tools.
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Many of the features demonstrated here are already provided by the ImageView
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widget, but here we present a lower-level approach that provides finer control
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over the user interface.
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"""
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import initExample ## Add path to library (just for examples; you do not need this)
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import pyqtgraph as pg
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from pyqtgraph.Qt import QtCore, QtGui
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import numpy as np
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pg.mkQApp()
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win = pg.GraphicsLayoutWidget()
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win.setWindowTitle('pyqtgraph example: Image Analysis')
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# A plot area (ViewBox + axes) for displaying the image
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p1 = win.addPlot()
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# Item for displaying image data
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img = pg.ImageItem()
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p1.addItem(img)
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# Custom ROI for selecting an image region
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roi = pg.ROI([-8, 14], [6, 5])
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roi.addScaleHandle([0.5, 1], [0.5, 0.5])
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roi.addScaleHandle([0, 0.5], [0.5, 0.5])
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p1.addItem(roi)
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roi.setZValue(10) # make sure ROI is drawn above image
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# Isocurve drawing
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iso = pg.IsocurveItem(level=0.8, pen='g')
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iso.setParentItem(img)
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iso.setZValue(5)
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# Contrast/color control
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hist = pg.HistogramLUTItem()
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hist.setImageItem(img)
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win.addItem(hist)
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# Draggable line for setting isocurve level
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isoLine = pg.InfiniteLine(angle=0, movable=True, pen='g')
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hist.vb.addItem(isoLine)
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hist.vb.setMouseEnabled(y=False) # makes user interaction a little easier
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isoLine.setValue(0.8)
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isoLine.setZValue(1000) # bring iso line above contrast controls
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# Another plot area for displaying ROI data
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win.nextRow()
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p2 = win.addPlot(colspan=2)
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p2.setMaximumHeight(250)
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win.resize(800, 800)
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win.show()
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# Generate image data
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data = np.random.normal(size=(100, 200))
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data[20:80, 20:80] += 2.
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data = pg.gaussianFilter(data, (3, 3))
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data += np.random.normal(size=(100, 200)) * 0.1
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img.setImage(data)
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hist.setLevels(data.min(), data.max())
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# build isocurves from smoothed data
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iso.setData(pg.gaussianFilter(data, (2, 2)))
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# set position and scale of image
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img.scale(0.2, 0.2)
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img.translate(-50, 0)
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# zoom to fit imageo
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p1.autoRange()
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# Callbacks for handling user interaction
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def updatePlot():
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global img, roi, data, p2
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selected = roi.getArrayRegion(data, img)
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p2.plot(selected.mean(axis=1), clear=True)
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roi.sigRegionChanged.connect(updatePlot)
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updatePlot()
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def updateIsocurve():
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global isoLine, iso
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iso.setLevel(isoLine.value())
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isoLine.sigDragged.connect(updateIsocurve)
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## Start Qt event loop unless running in interactive mode or using pyside.
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if __name__ == '__main__':
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import sys
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if (sys.flags.interactive != 1) or not hasattr(QtCore, 'PYQT_VERSION'):
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QtGui.QApplication.instance().exec_()
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@ -35,11 +35,6 @@ class IsocurveItem(GraphicsObject):
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self.setPen(pen)
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self.setPen(pen)
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self.setData(data, level)
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self.setData(data, level)
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#if data is not None and level is not None:
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#self.updateLines(data, level)
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def setData(self, data, level=None):
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def setData(self, data, level=None):
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"""
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"""
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@ -65,6 +60,7 @@ class IsocurveItem(GraphicsObject):
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"""Set the level at which the isocurve is drawn."""
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"""Set the level at which the isocurve is drawn."""
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self.level = level
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self.level = level
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self.path = None
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self.path = None
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self.prepareGeometryChange()
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self.update()
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self.update()
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