ROI tests pass
FIX: PolyLineROI.setPoints() did not clear points previously API: Allow ROI.setPos(x, y) in addition to setPos([x, y])
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Luke Campagnola
parent
ccf2ae4db4
commit
bb507cf6d0
@ -213,7 +213,7 @@ class ROI(GraphicsObject):
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"""Return the angle of the ROI in degrees."""
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return self.getState()['angle']
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def setPos(self, pos, update=True, finish=True):
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def setPos(self, pos, y=None, update=True, finish=True):
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"""Set the position of the ROI (in the parent's coordinate system).
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By default, this will cause both sigRegionChanged and sigRegionChangeFinished to be emitted.
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@ -225,10 +225,13 @@ class ROI(GraphicsObject):
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multiple change functions to be called sequentially while minimizing processing overhead
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and repeated signals. Setting update=False also forces finish=False.
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"""
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# This avoids the temptation to do setPos(x, y)
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if not isinstance(update, bool):
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raise TypeError("update argument must be bool.")
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if y is None:
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pos = Point(pos)
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else:
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# avoid ambiguity where update is provided as a positional argument
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if isinstance(y, bool):
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raise TypeError("Positional arguments to setPos() must be numerical.")
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pos = Point(pos, y)
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self.state['pos'] = pos
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QtGui.QGraphicsItem.setPos(self, pos)
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if update:
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@ -921,8 +924,9 @@ class ROI(GraphicsObject):
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if self.lastState is None:
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changed = True
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else:
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for k in list(self.state.keys()):
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if self.state[k] != self.lastState[k]:
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state = self.getState()
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for k in list(state.keys()):
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if state[k] != self.lastState[k]:
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changed = True
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self.prepareGeometryChange()
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@ -942,7 +946,7 @@ class ROI(GraphicsObject):
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self.sigRegionChanged.emit(self)
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self.freeHandleMoved = False
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self.lastState = self.stateCopy()
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self.lastState = self.getState()
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if finish:
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self.stateChangeFinished()
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@ -1133,6 +1137,9 @@ class ROI(GraphicsObject):
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This can be used to mask array selections.
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"""
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if width == 0 or height == 0:
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return np.empty((width, height), dtype=float)
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# QImage(width, height, format)
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im = QtGui.QImage(width, height, QtGui.QImage.Format_ARGB32)
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im.fill(0x0)
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@ -1864,6 +1871,8 @@ class PolyLineROI(ROI):
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if closed is not None:
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self.closed = closed
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self.clearPoints()
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for p in points:
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self.addFreeHandle(p)
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@ -1877,7 +1886,14 @@ class PolyLineROI(ROI):
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Remove all handles and segments.
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"""
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while len(self.handles) > 0:
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self.removeHandle(self.handles[0]['item'])
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update = len(self.handles) == 1
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self.removeHandle(self.handles[0]['item'], updateSegments=update)
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def getState(self):
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state = ROI.getState(self)
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state['closed'] = self.closed
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state['points'] = [Point(h.pos()) for h in self.getHandles()]
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return state
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def saveState(self):
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state = ROI.saveState(self)
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@ -1887,7 +1903,6 @@ class PolyLineROI(ROI):
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def setState(self, state):
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ROI.setState(self, state)
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self.clearPoints()
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self.setPoints(state['points'], closed=state['closed'])
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def addSegment(self, h1, h2, index=None):
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@ -1912,6 +1927,7 @@ class PolyLineROI(ROI):
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def addHandle(self, info, index=None):
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h = ROI.addHandle(self, info, index=index)
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h.sigRemoveRequested.connect(self.removeHandle)
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self.stateChanged(finish=True)
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return h
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def segmentClicked(self, segment, ev=None, pos=None): ## pos should be in this item's coordinate system
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@ -1944,6 +1960,7 @@ class PolyLineROI(ROI):
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handles.remove(handle)
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segments[0].replaceHandle(handle, handles[0])
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self.removeSegment(segments[1])
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self.stateChanged(finish=True)
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def removeSegment(self, seg):
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for handle in seg.handles[:]:
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@ -1980,12 +1997,16 @@ class PolyLineROI(ROI):
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Return the result of ROI.getArrayRegion(), masked by the shape of the
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ROI. Values outside the ROI shape are set to 0.
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"""
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br = self.boundingRect()
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if br.width() > 1000:
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raise Exception()
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sliced = ROI.getArrayRegion(self, data, img, axes=axes, fromBoundingRect=True)
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mask = self.renderShapeMask(sliced.shape[axes[0]], sliced.shape[axes[1]])
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shape = [1] * data.ndim
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shape[axes[0]] = sliced.shape[axes[0]]
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shape[axes[1]] = sliced.shape[axes[1]]
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mask = mask.reshape(shape)
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return sliced * mask
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def setPen(self, *args, **kwds):
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@ -8,17 +8,24 @@ app = pg.mkQApp()
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def test_getArrayRegion():
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pr = pg.PolyLineROI([[0, 0], [27, 0], [0, 28]], closed=True)
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pr.setPos(1, 1)
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rois = [
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(pg.ROI([1, 1], [27, 28], pen='y'), 'baseroi'),
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(pg.RectROI([1, 1], [27, 28], pen='y'), 'rectroi'),
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(pg.EllipseROI([1, 1], [27, 28], pen='y'), 'ellipseroi'),
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(pg.PolyLineROI([[0, 0], [27, 0], [0, 28]], closed=True), 'polylineroi'),
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(pr, 'polylineroi'),
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]
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for roi, name in rois:
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check_getArrayRegion(roi, name)
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# For some ROIs, resize should not be used.
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testResize = not isinstance(roi, pg.PolyLineROI)
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check_getArrayRegion(roi, 'roi/'+name, testResize)
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def check_getArrayRegion(roi, name):
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def check_getArrayRegion(roi, name, testResize=True):
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initState = roi.getState()
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win = pg.GraphicsLayoutWidget()
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win.show()
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win.resize(200, 400)
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@ -46,7 +53,7 @@ def check_getArrayRegion(roi, name):
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vb1.addItem(roi)
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rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
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#assert np.all((rgn == data[:, 1:-2, 1:-2, :]) | (rgn == 0))
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assert np.all((rgn == data[:, 1:-2, 1:-2, :]) | (rgn == 0))
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img2.setImage(rgn[0, ..., 0])
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vb2.setAspectLocked()
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vb2.enableAutoRange(True, True)
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@ -56,7 +63,7 @@ def check_getArrayRegion(roi, name):
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assertImageApproved(win, name+'/roi_getarrayregion', 'Simple ROI region selection.')
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with pytest.raises(TypeError):
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roi.setPos(0, 0)
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roi.setPos(0, False)
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roi.setPos([0.5, 1.5])
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rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
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@ -71,6 +78,7 @@ def check_getArrayRegion(roi, name):
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app.processEvents()
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assertImageApproved(win, name+'/roi_getarrayregion_rotate', 'Simple ROI region selection, rotation.')
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if testResize:
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roi.setSize([60, 60])
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rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
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img2.setImage(rgn[0, ..., 0])
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@ -91,13 +99,10 @@ def check_getArrayRegion(roi, name):
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app.processEvents()
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assertImageApproved(win, name+'/roi_getarrayregion_inverty', 'Simple ROI region selection, view inverted.')
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roi.setAngle(0)
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roi.setSize(30, 30)
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roi.setPos([0, 0])
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roi.setState(initState)
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img1.resetTransform()
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img1.setPos(0, 0)
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img1.scale(1, 0.5)
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#img1.scale(0.5, 1)
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rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
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img2.setImage(rgn[0, ..., 0])
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app.processEvents()
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