694 lines
26 KiB
Python
694 lines
26 KiB
Python
import pyqtgraph.metaarray as metaarray
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from pyqtgraph.Qt import QtCore
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from .GraphicsObject import GraphicsObject
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from .PlotCurveItem import PlotCurveItem
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from .ScatterPlotItem import ScatterPlotItem
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import numpy as np
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import scipy
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import pyqtgraph.functions as fn
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import pyqtgraph.debug as debug
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class PlotDataItem(GraphicsObject):
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"""
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**Bases:** :class:`GraphicsObject <pyqtgraph.GraphicsObject>`
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GraphicsItem for displaying plot curves, scatter plots, or both.
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While it is possible to use :class:`PlotCurveItem <pyqtgraph.PlotCurveItem>` or
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:class:`ScatterPlotItem <pyqtgraph.ScatterPlotItem>` individually, this class
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provides a unified interface to both. Inspances of :class:`PlotDataItem` are
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usually created by plot() methods such as :func:`pyqtgraph.plot` and
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:func:`PlotItem.plot() <pyqtgraph.PlotItem.plot>`.
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============================== ==============================================
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**Signals:**
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sigPlotChanged(self) Emitted when the data in this item is updated.
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sigClicked(self) Emitted when the item is clicked.
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sigPointsClicked(self, points) Emitted when a plot point is clicked
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Sends the list of points under the mouse.
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============================== ==============================================
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"""
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sigPlotChanged = QtCore.Signal(object)
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sigClicked = QtCore.Signal(object)
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sigPointsClicked = QtCore.Signal(object, object)
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def __init__(self, *args, **kargs):
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"""
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There are many different ways to create a PlotDataItem:
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**Data initialization arguments:** (x,y data only)
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=================================== ======================================
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PlotDataItem(xValues, yValues) x and y values may be any sequence (including ndarray) of real numbers
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PlotDataItem(yValues) y values only -- x will be automatically set to range(len(y))
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PlotDataItem(x=xValues, y=yValues) x and y given by keyword arguments
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PlotDataItem(ndarray(Nx2)) numpy array with shape (N, 2) where x=data[:,0] and y=data[:,1]
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=================================== ======================================
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**Data initialization arguments:** (x,y data AND may include spot style)
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=========================== =========================================
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PlotDataItem(recarray) numpy array with dtype=[('x', float), ('y', float), ...]
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PlotDataItem(list-of-dicts) [{'x': x, 'y': y, ...}, ...]
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PlotDataItem(dict-of-lists) {'x': [...], 'y': [...], ...}
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PlotDataItem(MetaArray) 1D array of Y values with X sepecified as axis values
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OR 2D array with a column 'y' and extra columns as needed.
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=========================== =========================================
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**Line style keyword arguments:**
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========== ================================================
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pen Pen to use for drawing line between points.
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Default is solid grey, 1px width. Use None to disable line drawing.
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May be any single argument accepted by :func:`mkPen() <pyqtgraph.mkPen>`
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shadowPen Pen for secondary line to draw behind the primary line. disabled by default.
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May be any single argument accepted by :func:`mkPen() <pyqtgraph.mkPen>`
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fillLevel Fill the area between the curve and fillLevel
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fillBrush Fill to use when fillLevel is specified.
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May be any single argument accepted by :func:`mkBrush() <pyqtgraph.mkBrush>`
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========== ================================================
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**Point style keyword arguments:** (see :func:`ScatterPlotItem.setData() <pyqtgraph.ScatterPlotItem.setData>` for more information)
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============ ================================================
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symbol Symbol to use for drawing points OR list of symbols, one per point. Default is no symbol.
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Options are o, s, t, d, +, or any QPainterPath
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symbolPen Outline pen for drawing points OR list of pens, one per point.
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May be any single argument accepted by :func:`mkPen() <pyqtgraph.mkPen>`
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symbolBrush Brush for filling points OR list of brushes, one per point.
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May be any single argument accepted by :func:`mkBrush() <pyqtgraph.mkBrush>`
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symbolSize Diameter of symbols OR list of diameters.
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pxMode (bool) If True, then symbolSize is specified in pixels. If False, then symbolSize is
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specified in data coordinates.
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============ ================================================
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**Optimization keyword arguments:**
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========== =====================================================================
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identical *deprecated*
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decimate (int) sub-sample data by selecting every nth sample before plotting
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========== =====================================================================
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**Meta-info keyword arguments:**
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========== ================================================
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name name of dataset. This would appear in a legend
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========== ================================================
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"""
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GraphicsObject.__init__(self)
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self.setFlag(self.ItemHasNoContents)
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self.xData = None
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self.yData = None
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self.xDisp = None
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self.yDisp = None
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#self.curves = []
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#self.scatters = []
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self.curve = PlotCurveItem()
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self.scatter = ScatterPlotItem()
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self.curve.setParentItem(self)
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self.scatter.setParentItem(self)
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self.curve.sigClicked.connect(self.curveClicked)
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self.scatter.sigClicked.connect(self.scatterClicked)
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#self.clear()
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self.opts = {
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'fftMode': False,
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'logMode': [False, False],
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'downsample': False,
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'alphaHint': 1.0,
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'alphaMode': False,
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'pen': (200,200,200),
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'shadowPen': None,
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'fillLevel': None,
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'fillBrush': None,
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'symbol': None,
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'symbolSize': 10,
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'symbolPen': (200,200,200),
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'symbolBrush': (50, 50, 150),
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'pxMode': True,
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'pointMode': None,
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'data': None,
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}
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self.setData(*args, **kargs)
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def implements(self, interface=None):
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ints = ['plotData']
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if interface is None:
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return ints
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return interface in ints
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def boundingRect(self):
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return QtCore.QRectF() ## let child items handle this
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def setAlpha(self, alpha, auto):
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if self.opts['alphaHint'] == alpha and self.opts['alphaMode'] == auto:
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return
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self.opts['alphaHint'] = alpha
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self.opts['alphaMode'] = auto
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self.setOpacity(alpha)
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#self.update()
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def setFftMode(self, mode):
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if self.opts['fftMode'] == mode:
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return
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self.opts['fftMode'] = mode
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self.xDisp = self.yDisp = None
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self.updateItems()
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def setLogMode(self, xMode, yMode):
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if self.opts['logMode'] == [xMode, yMode]:
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return
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self.opts['logMode'] = [xMode, yMode]
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self.xDisp = self.yDisp = None
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self.updateItems()
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def setPointMode(self, mode):
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if self.opts['pointMode'] == mode:
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return
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self.opts['pointMode'] = mode
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self.update()
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def setPen(self, *args, **kargs):
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"""
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| Sets the pen used to draw lines between points.
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| *pen* can be a QPen or any argument accepted by :func:`pyqtgraph.mkPen() <pyqtgraph.mkPen>`
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"""
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pen = fn.mkPen(*args, **kargs)
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self.opts['pen'] = pen
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#self.curve.setPen(pen)
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#for c in self.curves:
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#c.setPen(pen)
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#self.update()
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self.updateItems()
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def setShadowPen(self, *args, **kargs):
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"""
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| Sets the shadow pen used to draw lines between points (this is for enhancing contrast or
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emphacizing data).
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| This line is drawn behind the primary pen (see :func:`setPen() <pyqtgraph.PlotDataItem.setPen>`)
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and should generally be assigned greater width than the primary pen.
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| *pen* can be a QPen or any argument accepted by :func:`pyqtgraph.mkPen() <pyqtgraph.mkPen>`
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"""
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pen = fn.mkPen(*args, **kargs)
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self.opts['shadowPen'] = pen
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#for c in self.curves:
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#c.setPen(pen)
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#self.update()
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self.updateItems()
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def setFillBrush(self, *args, **kargs):
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brush = fn.mkBrush(*args, **kargs)
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if self.opts['fillBrush'] == brush:
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return
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self.opts['fillBrush'] = brush
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self.updateItems()
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def setBrush(self, *args, **kargs):
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return self.setFillBrush(*args, **kargs)
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def setFillLevel(self, level):
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if self.opts['fillLevel'] == level:
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return
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self.opts['fillLevel'] = level
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self.updateItems()
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def setSymbol(self, symbol):
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if self.opts['symbol'] == symbol:
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return
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self.opts['symbol'] = symbol
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#self.scatter.setSymbol(symbol)
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self.updateItems()
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def setSymbolPen(self, *args, **kargs):
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pen = fn.mkPen(*args, **kargs)
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if self.opts['symbolPen'] == pen:
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return
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self.opts['symbolPen'] = pen
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#self.scatter.setSymbolPen(pen)
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self.updateItems()
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def setSymbolBrush(self, *args, **kargs):
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brush = fn.mkBrush(*args, **kargs)
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if self.opts['symbolBrush'] == brush:
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return
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self.opts['symbolBrush'] = brush
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#self.scatter.setSymbolBrush(brush)
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self.updateItems()
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def setSymbolSize(self, size):
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if self.opts['symbolSize'] == size:
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return
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self.opts['symbolSize'] = size
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#self.scatter.setSymbolSize(symbolSize)
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self.updateItems()
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def setDownsampling(self, ds):
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if self.opts['downsample'] == ds:
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return
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self.opts['downsample'] = ds
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self.xDisp = self.yDisp = None
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self.updateItems()
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def setData(self, *args, **kargs):
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"""
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Clear any data displayed by this item and display new data.
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See :func:`__init__() <pyqtgraph.PlotDataItem.__init__>` for details; it accepts the same arguments.
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"""
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#self.clear()
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prof = debug.Profiler('PlotDataItem.setData (0x%x)' % id(self), disabled=True)
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y = None
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x = None
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if len(args) == 1:
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data = args[0]
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dt = dataType(data)
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if dt == 'empty':
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pass
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elif dt == 'listOfValues':
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y = np.array(data)
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elif dt == 'Nx2array':
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x = data[:,0]
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y = data[:,1]
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elif dt == 'recarray' or dt == 'dictOfLists':
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if 'x' in data:
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x = np.array(data['x'])
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if 'y' in data:
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y = np.array(data['y'])
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elif dt == 'listOfDicts':
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if 'x' in data[0]:
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x = np.array([d.get('x',None) for d in data])
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if 'y' in data[0]:
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y = np.array([d.get('y',None) for d in data])
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for k in ['data', 'symbolSize', 'symbolPen', 'symbolBrush', 'symbolShape']:
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if k in data:
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kargs[k] = [d.get(k, None) for d in data]
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elif dt == 'MetaArray':
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y = data.view(np.ndarray)
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x = data.xvals(0).view(np.ndarray)
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else:
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raise Exception('Invalid data type %s' % type(data))
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elif len(args) == 2:
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seq = ('listOfValues', 'MetaArray')
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if dataType(args[0]) not in seq or dataType(args[1]) not in seq:
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raise Exception('When passing two unnamed arguments, both must be a list or array of values. (got %s, %s)' % (str(type(args[0])), str(type(args[1]))))
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if not isinstance(args[0], np.ndarray):
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x = np.array(args[0])
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else:
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x = args[0].view(np.ndarray)
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if not isinstance(args[1], np.ndarray):
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y = np.array(args[1])
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else:
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y = args[1].view(np.ndarray)
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if 'x' in kargs:
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x = kargs['x']
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if 'y' in kargs:
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y = kargs['y']
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prof.mark('interpret data')
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## pull in all style arguments.
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## Use self.opts to fill in anything not present in kargs.
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## if symbol pen/brush are given with no symbol, then assume symbol is 'o'
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if 'symbol' not in kargs and ('symbolPen' in kargs or 'symbolBrush' in kargs or 'symbolSize' in kargs):
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kargs['symbol'] = 'o'
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if 'brush' in kargs:
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kargs['fillBrush'] = kargs['brush']
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for k in list(self.opts.keys()):
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if k in kargs:
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self.opts[k] = kargs[k]
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#curveArgs = {}
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#for k in ['pen', 'shadowPen', 'fillLevel', 'brush']:
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#if k in kargs:
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#self.opts[k] = kargs[k]
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#curveArgs[k] = self.opts[k]
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#scatterArgs = {}
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#for k,v in [('symbolPen','pen'), ('symbolBrush','brush'), ('symbol','symbol')]:
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#if k in kargs:
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#self.opts[k] = kargs[k]
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#scatterArgs[v] = self.opts[k]
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if y is None:
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return
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if y is not None and x is None:
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x = np.arange(len(y))
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if isinstance(x, list):
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x = np.array(x)
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if isinstance(y, list):
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y = np.array(y)
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self.xData = x.view(np.ndarray) ## one last check to make sure there are no MetaArrays getting by
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self.yData = y.view(np.ndarray)
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self.xDisp = None
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self.yDisp = None
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prof.mark('set data')
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self.updateItems()
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prof.mark('update items')
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view = self.getViewBox()
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if view is not None:
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view.itemBoundsChanged(self) ## inform view so it can update its range if it wants
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self.sigPlotChanged.emit(self)
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prof.mark('emit')
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prof.finish()
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def updateItems(self):
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#for c in self.curves+self.scatters:
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#if c.scene() is not None:
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#c.scene().removeItem(c)
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curveArgs = {}
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for k,v in [('pen','pen'), ('shadowPen','shadowPen'), ('fillLevel','fillLevel'), ('fillBrush', 'brush')]:
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curveArgs[v] = self.opts[k]
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scatterArgs = {}
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for k,v in [('symbolPen','pen'), ('symbolBrush','brush'), ('symbol','symbol'), ('symbolSize', 'size'), ('data', 'data'), ('pxMode', 'pxMode')]:
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if k in self.opts:
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scatterArgs[v] = self.opts[k]
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x,y = self.getData()
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if curveArgs['pen'] is not None or (curveArgs['brush'] is not None and curveArgs['fillLevel'] is not None):
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self.curve.setData(x=x, y=y, **curveArgs)
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self.curve.show()
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else:
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self.curve.hide()
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#curve = PlotCurveItem(x=x, y=y, **curveArgs)
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#curve.setParentItem(self)
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#self.curves.append(curve)
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if scatterArgs['symbol'] is not None:
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self.scatter.setData(x=x, y=y, **scatterArgs)
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self.scatter.show()
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else:
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self.scatter.hide()
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#sp = ScatterPlotItem(x=x, y=y, **scatterArgs)
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#sp.setParentItem(self)
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#self.scatters.append(sp)
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def getData(self):
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if self.xData is None:
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return (None, None)
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if self.xDisp is None:
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nanMask = np.isnan(self.xData) | np.isnan(self.yData) | np.isinf(self.xData) | np.isinf(self.yData)
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if any(nanMask):
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x = self.xData[~nanMask]
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y = self.yData[~nanMask]
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else:
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x = self.xData
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y = self.yData
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ds = self.opts['downsample']
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if ds > 1:
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x = x[::ds]
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#y = resample(y[:len(x)*ds], len(x)) ## scipy.signal.resample causes nasty ringing
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y = y[::ds]
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if self.opts['fftMode']:
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f = np.fft.fft(y) / len(y)
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y = abs(f[1:len(f)/2])
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dt = x[-1] - x[0]
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x = np.linspace(0, 0.5*len(x)/dt, len(y))
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if self.opts['logMode'][0]:
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x = np.log10(x)
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if self.opts['logMode'][1]:
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y = np.log10(y)
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if any(self.opts['logMode']): ## re-check for NANs after log
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nanMask = np.isinf(x) | np.isinf(y) | np.isnan(x) | np.isnan(y)
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if any(nanMask):
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x = x[~nanMask]
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y = y[~nanMask]
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self.xDisp = x
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self.yDisp = y
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#print self.yDisp.shape, self.yDisp.min(), self.yDisp.max()
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#print self.xDisp.shape, self.xDisp.min(), self.xDisp.max()
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return self.xDisp, self.yDisp
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def dataBounds(self, ax, frac=1.0, orthoRange=None):
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"""
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Returns the range occupied by the data (along a specific axis) in this item.
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This method is called by ViewBox when auto-scaling.
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=============== =============================================================
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**Arguments:**
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ax (0 or 1) the axis for which to return this item's data range
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frac (float 0.0-1.0) Specifies what fraction of the total data
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range to return. By default, the entire range is returned.
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This allows the ViewBox to ignore large spikes in the data
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when auto-scaling.
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orthoRange ([min,max] or None) Specifies that only the data within the
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given range (orthogonal to *ax*) should me measured when
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returning the data range. (For example, a ViewBox might ask
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what is the y-range of all data with x-values between min
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and max)
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=============== =============================================================
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"""
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(x, y) = self.getData()
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if x is None or len(x) == 0:
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return (0, 0)
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if ax == 0:
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d = x
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d2 = y
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elif ax == 1:
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d = y
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d2 = x
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if orthoRange is not None:
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mask = (d2 >= orthoRange[0]) * (d2 <= orthoRange[1])
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d = d[mask]
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d2 = d2[mask]
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if frac >= 1.0:
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return (np.min(d), np.max(d))
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elif frac <= 0.0:
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raise Exception("Value for parameter 'frac' must be > 0. (got %s)" % str(frac))
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else:
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return (scipy.stats.scoreatpercentile(d, 50 - (frac * 50)), scipy.stats.scoreatpercentile(d, 50 + (frac * 50)))
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def clear(self):
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#for i in self.curves+self.scatters:
|
|
#if i.scene() is not None:
|
|
#i.scene().removeItem(i)
|
|
#self.curves = []
|
|
#self.scatters = []
|
|
self.xData = None
|
|
self.yData = None
|
|
self.xDisp = None
|
|
self.yDisp = None
|
|
self.curve.setData([])
|
|
self.scatter.setData([])
|
|
|
|
def appendData(self, *args, **kargs):
|
|
pass
|
|
|
|
def curveClicked(self):
|
|
self.sigClicked.emit(self)
|
|
|
|
def scatterClicked(self, plt, points):
|
|
self.sigClicked.emit(self)
|
|
self.sigPointsClicked.emit(self, points)
|
|
|
|
|
|
def dataType(obj):
|
|
if hasattr(obj, '__len__') and len(obj) == 0:
|
|
return 'empty'
|
|
if isSequence(obj):
|
|
first = obj[0]
|
|
|
|
if (hasattr(obj, 'implements') and obj.implements('MetaArray')):
|
|
return 'MetaArray'
|
|
elif isinstance(obj, np.ndarray):
|
|
if obj.ndim == 1:
|
|
if obj.dtype.names is None:
|
|
return 'listOfValues'
|
|
else:
|
|
return 'recarray'
|
|
elif obj.ndim == 2 and obj.dtype.names is None and obj.shape[1] == 2:
|
|
return 'Nx2array'
|
|
else:
|
|
raise Exception('array shape must be (N,) or (N,2); got %s instead' % str(obj.shape))
|
|
elif isinstance(first, dict):
|
|
return 'listOfDicts'
|
|
else:
|
|
return 'listOfValues'
|
|
elif isinstance(obj, dict):
|
|
return 'dictOfLists'
|
|
|
|
|
|
def isSequence(obj):
|
|
return isinstance(obj, list) or isinstance(obj, np.ndarray) or (hasattr(obj, 'implements') and obj.implements('MetaArray'))
|
|
|
|
|
|
|
|
#class TableData:
|
|
#"""
|
|
#Class for presenting multiple forms of tabular data through a consistent interface.
|
|
#May contain:
|
|
#- numpy record array
|
|
#- list-of-dicts (all dicts are _not_ required to have the same keys)
|
|
#- dict-of-lists
|
|
#- dict (single record)
|
|
#Note: if all the values in this record are lists, it will be interpreted as multiple records
|
|
|
|
#Data can be accessed and modified by column, by row, or by value
|
|
#data[columnName]
|
|
#data[rowId]
|
|
#data[columnName, rowId] = value
|
|
#data[columnName] = [value, value, ...]
|
|
#data[rowId] = {columnName: value, ...}
|
|
#"""
|
|
|
|
#def __init__(self, data):
|
|
#self.data = data
|
|
#if isinstance(data, np.ndarray):
|
|
#self.mode = 'array'
|
|
#elif isinstance(data, list):
|
|
#self.mode = 'list'
|
|
#elif isinstance(data, dict):
|
|
#types = set(map(type, data.values()))
|
|
### dict may be a dict-of-lists or a single record
|
|
#types -= set([list, np.ndarray]) ## if dict contains any non-sequence values, it is probably a single record.
|
|
#if len(types) != 0:
|
|
#self.data = [self.data]
|
|
#self.mode = 'list'
|
|
#else:
|
|
#self.mode = 'dict'
|
|
#elif isinstance(data, TableData):
|
|
#self.data = data.data
|
|
#self.mode = data.mode
|
|
#else:
|
|
#raise TypeError(type(data))
|
|
|
|
#for fn in ['__getitem__', '__setitem__']:
|
|
#setattr(self, fn, getattr(self, '_TableData'+fn+self.mode))
|
|
|
|
#def originalData(self):
|
|
#return self.data
|
|
|
|
#def toArray(self):
|
|
#if self.mode == 'array':
|
|
#return self.data
|
|
#if len(self) < 1:
|
|
##return np.array([]) ## need to return empty array *with correct columns*, but this is very difficult, so just return None
|
|
#return None
|
|
#rec1 = self[0]
|
|
#dtype = functions.suggestRecordDType(rec1)
|
|
##print rec1, dtype
|
|
#arr = np.empty(len(self), dtype=dtype)
|
|
#arr[0] = tuple(rec1.values())
|
|
#for i in xrange(1, len(self)):
|
|
#arr[i] = tuple(self[i].values())
|
|
#return arr
|
|
|
|
#def __getitem__array(self, arg):
|
|
#if isinstance(arg, tuple):
|
|
#return self.data[arg[0]][arg[1]]
|
|
#else:
|
|
#return self.data[arg]
|
|
|
|
#def __getitem__list(self, arg):
|
|
#if isinstance(arg, basestring):
|
|
#return [d.get(arg, None) for d in self.data]
|
|
#elif isinstance(arg, int):
|
|
#return self.data[arg]
|
|
#elif isinstance(arg, tuple):
|
|
#arg = self._orderArgs(arg)
|
|
#return self.data[arg[0]][arg[1]]
|
|
#else:
|
|
#raise TypeError(type(arg))
|
|
|
|
#def __getitem__dict(self, arg):
|
|
#if isinstance(arg, basestring):
|
|
#return self.data[arg]
|
|
#elif isinstance(arg, int):
|
|
#return dict([(k, v[arg]) for k, v in self.data.iteritems()])
|
|
#elif isinstance(arg, tuple):
|
|
#arg = self._orderArgs(arg)
|
|
#return self.data[arg[1]][arg[0]]
|
|
#else:
|
|
#raise TypeError(type(arg))
|
|
|
|
#def __setitem__array(self, arg, val):
|
|
#if isinstance(arg, tuple):
|
|
#self.data[arg[0]][arg[1]] = val
|
|
#else:
|
|
#self.data[arg] = val
|
|
|
|
#def __setitem__list(self, arg, val):
|
|
#if isinstance(arg, basestring):
|
|
#if len(val) != len(self.data):
|
|
#raise Exception("Values (%d) and data set (%d) are not the same length." % (len(val), len(self.data)))
|
|
#for i, rec in enumerate(self.data):
|
|
#rec[arg] = val[i]
|
|
#elif isinstance(arg, int):
|
|
#self.data[arg] = val
|
|
#elif isinstance(arg, tuple):
|
|
#arg = self._orderArgs(arg)
|
|
#self.data[arg[0]][arg[1]] = val
|
|
#else:
|
|
#raise TypeError(type(arg))
|
|
|
|
#def __setitem__dict(self, arg, val):
|
|
#if isinstance(arg, basestring):
|
|
#if len(val) != len(self.data[arg]):
|
|
#raise Exception("Values (%d) and data set (%d) are not the same length." % (len(val), len(self.data[arg])))
|
|
#self.data[arg] = val
|
|
#elif isinstance(arg, int):
|
|
#for k in self.data:
|
|
#self.data[k][arg] = val[k]
|
|
#elif isinstance(arg, tuple):
|
|
#arg = self._orderArgs(arg)
|
|
#self.data[arg[1]][arg[0]] = val
|
|
#else:
|
|
#raise TypeError(type(arg))
|
|
|
|
#def _orderArgs(self, args):
|
|
### return args in (int, str) order
|
|
#if isinstance(args[0], basestring):
|
|
#return (args[1], args[0])
|
|
#else:
|
|
#return args
|
|
|
|
#def __iter__(self):
|
|
#for i in xrange(len(self)):
|
|
#yield self[i]
|
|
|
|
#def __len__(self):
|
|
#if self.mode == 'array' or self.mode == 'list':
|
|
#return len(self.data)
|
|
#else:
|
|
#return max(map(len, self.data.values()))
|
|
|
|
#def columnNames(self):
|
|
#"""returns column names in no particular order"""
|
|
#if self.mode == 'array':
|
|
#return self.data.dtype.names
|
|
#elif self.mode == 'list':
|
|
#names = set()
|
|
#for row in self.data:
|
|
#names.update(row.keys())
|
|
#return list(names)
|
|
#elif self.mode == 'dict':
|
|
#return self.data.keys()
|
|
|
|
#def keys(self):
|
|
#return self.columnNames()
|