pyqtgraph/graphicsItems/PlotCurveItem.py
2013-02-12 21:44:42 -05:00

484 lines
17 KiB
Python

from pyqtgraph.Qt import QtGui, QtCore
from scipy.fftpack import fft
import numpy as np
import scipy.stats
from .GraphicsObject import GraphicsObject
import pyqtgraph.functions as fn
from pyqtgraph import debug
from pyqtgraph.Point import Point
import pyqtgraph as pg
import struct, sys
__all__ = ['PlotCurveItem']
class PlotCurveItem(GraphicsObject):
"""
Class representing a single plot curve. Instances of this class are created
automatically as part of PlotDataItem; these rarely need to be instantiated
directly.
Features:
- Fast data update
- FFT display mode (accessed via PlotItem context menu)
- Fill under curve
- Mouse interaction
==================== ===============================================
**Signals:**
sigPlotChanged(self) Emitted when the data being plotted has changed
sigClicked(self) Emitted when the curve is clicked
==================== ===============================================
"""
sigPlotChanged = QtCore.Signal(object)
sigClicked = QtCore.Signal(object)
def __init__(self, *args, **kargs):
"""
Forwards all arguments to :func:`setData <pyqtgraph.PlotCurveItem.setData>`.
Some extra arguments are accepted as well:
============== =======================================================
**Arguments:**
parent The parent GraphicsObject (optional)
clickable If True, the item will emit sigClicked when it is
clicked on. Defaults to False.
============== =======================================================
"""
GraphicsObject.__init__(self, kargs.get('parent', None))
self.clear()
self.path = None
self.fillPath = None
self._boundsCache = [None, None]
## this is disastrous for performance.
#self.setCacheMode(QtGui.QGraphicsItem.DeviceCoordinateCache)
self.metaData = {}
self.opts = {
'pen': fn.mkPen('w'),
'shadowPen': None,
'fillLevel': None,
'brush': None,
'stepMode': False,
'name': None,
'antialias': pg.getConfigOption('antialias'),
}
self.setClickable(kargs.get('clickable', False))
self.setData(*args, **kargs)
def implements(self, interface=None):
ints = ['plotData']
if interface is None:
return ints
return interface in ints
def setClickable(self, s):
"""Sets whether the item responds to mouse clicks."""
self.clickable = s
def getData(self):
return self.xData, self.yData
def dataBounds(self, ax, frac=1.0, orthoRange=None):
## Need this to run as fast as possible.
## check cache first:
cache = self._boundsCache[ax]
if cache is not None and cache[0] == (frac, orthoRange):
return cache[1]
(x, y) = self.getData()
if x is None or len(x) == 0:
return (None, None)
if ax == 0:
d = x
d2 = y
elif ax == 1:
d = y
d2 = x
## If an orthogonal range is specified, mask the data now
if orthoRange is not None:
mask = (d2 >= orthoRange[0]) * (d2 <= orthoRange[1])
d = d[mask]
d2 = d2[mask]
## Get min/max (or percentiles) of the requested data range
if frac >= 1.0:
b = (d.min(), d.max())
elif frac <= 0.0:
raise Exception("Value for parameter 'frac' must be > 0. (got %s)" % str(frac))
else:
b = (scipy.stats.scoreatpercentile(d, 50 - (frac * 50)), scipy.stats.scoreatpercentile(d, 50 + (frac * 50)))
## adjust for fill level
if ax == 1 and self.opts['fillLevel'] is not None:
b = (min(b[0], self.opts['fillLevel']), max(b[1], self.opts['fillLevel']))
## Add pen width only if it is non-cosmetic.
pen = self.opts['pen']
spen = self.opts['shadowPen']
if not pen.isCosmetic():
b = (b[0] - pen.widthF()*0.7072, b[1] + pen.widthF()*0.7072)
if spen is not None and not spen.isCosmetic() and spen.style() != QtCore.Qt.NoPen:
b = (b[0] - spen.widthF()*0.7072, b[1] + spen.widthF()*0.7072)
self._boundsCache[ax] = [(frac, orthoRange), b]
return b
def pixelPadding(self):
pen = self.opts['pen']
spen = self.opts['shadowPen']
w = 0
if pen.isCosmetic():
w += pen.widthF()*0.7072
if spen is not None and spen.isCosmetic() and spen.style() != QtCore.Qt.NoPen:
w = max(w, spen.widthF()*0.7072)
return w
def boundingRect(self):
if self._boundingRect is None:
(xmn, xmx) = self.dataBounds(ax=0)
(ymn, ymx) = self.dataBounds(ax=1)
if xmn is None:
return QtCore.QRectF()
px = py = 0.0
pxPad = self.pixelPadding()
if pxPad > 0:
# determine length of pixel in local x, y directions
px, py = self.pixelVectors()
px = 0 if px is None else px.length()
py = 0 if py is None else py.length()
# return bounds expanded by pixel size
px *= pxPad
py *= pxPad
#px += self._maxSpotWidth * 0.5
#py += self._maxSpotWidth * 0.5
self._boundingRect = QtCore.QRectF(xmn-px, ymn-py, (2*px)+xmx-xmn, (2*py)+ymx-ymn)
return self._boundingRect
def viewTransformChanged(self):
self.invalidateBounds()
self.prepareGeometryChange()
#def boundingRect(self):
#if self._boundingRect is None:
#(x, y) = self.getData()
#if x is None or y is None or len(x) == 0 or len(y) == 0:
#return QtCore.QRectF()
#if self.opts['shadowPen'] is not None:
#lineWidth = (max(self.opts['pen'].width(), self.opts['shadowPen'].width()) + 1)
#else:
#lineWidth = (self.opts['pen'].width()+1)
#pixels = self.pixelVectors()
#if pixels == (None, None):
#pixels = [Point(0,0), Point(0,0)]
#xmin = x.min()
#xmax = x.max()
#ymin = y.min()
#ymax = y.max()
#if self.opts['fillLevel'] is not None:
#ymin = min(ymin, self.opts['fillLevel'])
#ymax = max(ymax, self.opts['fillLevel'])
#xmin -= pixels[0].x() * lineWidth
#xmax += pixels[0].x() * lineWidth
#ymin -= abs(pixels[1].y()) * lineWidth
#ymax += abs(pixels[1].y()) * lineWidth
#self._boundingRect = QtCore.QRectF(xmin, ymin, xmax-xmin, ymax-ymin)
#return self._boundingRect
def invalidateBounds(self):
self._boundingRect = None
self._boundsCache = [None, None]
def setPen(self, *args, **kargs):
"""Set the pen used to draw the curve."""
self.opts['pen'] = fn.mkPen(*args, **kargs)
self.invalidateBounds()
self.update()
def setShadowPen(self, *args, **kargs):
"""Set the shadow pen used to draw behind tyhe primary pen.
This pen must have a larger width than the primary
pen to be visible.
"""
self.opts['shadowPen'] = fn.mkPen(*args, **kargs)
self.invalidateBounds()
self.update()
def setBrush(self, *args, **kargs):
"""Set the brush used when filling the area under the curve"""
self.opts['brush'] = fn.mkBrush(*args, **kargs)
self.invalidateBounds()
self.update()
def setFillLevel(self, level):
"""Set the level filled to when filling under the curve"""
self.opts['fillLevel'] = level
self.fillPath = None
self.invalidateBounds()
self.update()
def setData(self, *args, **kargs):
"""
============== ========================================================
**Arguments:**
x, y (numpy arrays) Data to show
pen Pen to use when drawing. Any single argument accepted by
:func:`mkPen <pyqtgraph.mkPen>` is allowed.
shadowPen Pen for drawing behind the primary pen. Usually this
is used to emphasize the curve by providing a
high-contrast border. Any single argument accepted by
:func:`mkPen <pyqtgraph.mkPen>` is allowed.
fillLevel (float or None) Fill the area 'under' the curve to
*fillLevel*
brush QBrush to use when filling. Any single argument accepted
by :func:`mkBrush <pyqtgraph.mkBrush>` is allowed.
antialias (bool) Whether to use antialiasing when drawing. This
is disabled by default because it decreases performance.
============== ========================================================
If non-keyword arguments are used, they will be interpreted as
setData(y) for a single argument and setData(x, y) for two
arguments.
"""
self.updateData(*args, **kargs)
def updateData(self, *args, **kargs):
prof = debug.Profiler('PlotCurveItem.updateData', disabled=True)
if len(args) == 1:
kargs['y'] = args[0]
elif len(args) == 2:
kargs['x'] = args[0]
kargs['y'] = args[1]
if 'y' not in kargs or kargs['y'] is None:
kargs['y'] = np.array([])
if 'x' not in kargs or kargs['x'] is None:
kargs['x'] = np.arange(len(kargs['y']))
for k in ['x', 'y']:
data = kargs[k]
if isinstance(data, list):
data = np.array(data)
kargs[k] = data
if not isinstance(data, np.ndarray) or data.ndim > 1:
raise Exception("Plot data must be 1D ndarray.")
if 'complex' in str(data.dtype):
raise Exception("Can not plot complex data types.")
prof.mark("data checks")
#self.setCacheMode(QtGui.QGraphicsItem.NoCache) ## Disabling and re-enabling the cache works around a bug in Qt 4.6 causing the cached results to display incorrectly
## Test this bug with test_PlotWidget and zoom in on the animated plot
self.invalidateBounds()
self.prepareGeometryChange()
self.informViewBoundsChanged()
self.yData = kargs['y'].view(np.ndarray)
self.xData = kargs['x'].view(np.ndarray)
prof.mark('copy')
if 'stepMode' in kargs:
self.opts['stepMode'] = kargs['stepMode']
if self.opts['stepMode'] is True:
if len(self.xData) != len(self.yData)+1: ## allow difference of 1 for step mode plots
raise Exception("len(X) must be len(Y)+1 since stepMode=True (got %s and %s)" % (str(x.shape), str(y.shape)))
else:
if self.xData.shape != self.yData.shape: ## allow difference of 1 for step mode plots
raise Exception("X and Y arrays must be the same shape--got %s and %s." % (str(x.shape), str(y.shape)))
self.path = None
self.fillPath = None
#self.xDisp = self.yDisp = None
if 'name' in kargs:
self.opts['name'] = kargs['name']
if 'pen' in kargs:
self.setPen(kargs['pen'])
if 'shadowPen' in kargs:
self.setShadowPen(kargs['shadowPen'])
if 'fillLevel' in kargs:
self.setFillLevel(kargs['fillLevel'])
if 'brush' in kargs:
self.setBrush(kargs['brush'])
if 'antialias' in kargs:
self.opts['antialias'] = kargs['antialias']
prof.mark('set')
self.update()
prof.mark('update')
self.sigPlotChanged.emit(self)
prof.mark('emit')
prof.finish()
def generatePath(self, x, y):
if self.opts['stepMode']:
## each value in the x/y arrays generates 2 points.
x2 = np.empty((len(x),2), dtype=x.dtype)
x2[:] = x[:,np.newaxis]
if self.opts['fillLevel'] is None:
x = x2.reshape(x2.size)[1:-1]
y2 = np.empty((len(y),2), dtype=y.dtype)
y2[:] = y[:,np.newaxis]
y = y2.reshape(y2.size)
else:
## If we have a fill level, add two extra points at either end
x = x2.reshape(x2.size)
y2 = np.empty((len(y)+2,2), dtype=y.dtype)
y2[1:-1] = y[:,np.newaxis]
y = y2.reshape(y2.size)[1:-1]
y[0] = self.opts['fillLevel']
y[-1] = self.opts['fillLevel']
path = fn.arrayToQPath(x, y, connect='all')
return path
def shape(self):
if self.path is None:
try:
self.path = self.generatePath(*self.getData())
except:
return QtGui.QPainterPath()
return self.path
def paint(self, p, opt, widget):
prof = debug.Profiler('PlotCurveItem.paint '+str(id(self)), disabled=True)
if self.xData is None:
return
#if self.opts['spectrumMode']:
#if self.specPath is None:
#self.specPath = self.generatePath(*self.getData())
#path = self.specPath
#else:
x = None
y = None
if self.path is None:
x,y = self.getData()
if x is None or len(x) == 0 or y is None or len(y) == 0:
return
self.path = self.generatePath(x,y)
self.fillPath = None
path = self.path
prof.mark('generate path')
if self._exportOpts is not False:
aa = self._exportOpts.get('antialias', True)
else:
aa = self.opts['antialias']
p.setRenderHint(p.Antialiasing, aa)
if self.opts['brush'] is not None and self.opts['fillLevel'] is not None:
if self.fillPath is None:
if x is None:
x,y = self.getData()
p2 = QtGui.QPainterPath(self.path)
p2.lineTo(x[-1], self.opts['fillLevel'])
p2.lineTo(x[0], self.opts['fillLevel'])
p2.lineTo(x[0], y[0])
p2.closeSubpath()
self.fillPath = p2
prof.mark('generate fill path')
p.fillPath(self.fillPath, self.opts['brush'])
prof.mark('draw fill path')
sp = fn.mkPen(self.opts['shadowPen'])
cp = fn.mkPen(self.opts['pen'])
## Copy pens and apply alpha adjustment
#sp = QtGui.QPen(self.opts['shadowPen'])
#cp = QtGui.QPen(self.opts['pen'])
#for pen in [sp, cp]:
#if pen is None:
#continue
#c = pen.color()
#c.setAlpha(c.alpha() * self.opts['alphaHint'])
#pen.setColor(c)
##pen.setCosmetic(True)
if sp is not None and sp.style() != QtCore.Qt.NoPen:
p.setPen(sp)
p.drawPath(path)
p.setPen(cp)
p.drawPath(path)
prof.mark('drawPath')
#print "Render hints:", int(p.renderHints())
prof.finish()
#p.setPen(QtGui.QPen(QtGui.QColor(255,0,0)))
#p.drawRect(self.boundingRect())
def clear(self):
self.xData = None ## raw values
self.yData = None
self.xDisp = None ## display values (after log / fft)
self.yDisp = None
self.path = None
#del self.xData, self.yData, self.xDisp, self.yDisp, self.path
def mouseClickEvent(self, ev):
if not self.clickable or ev.button() != QtCore.Qt.LeftButton:
return
ev.accept()
self.sigClicked.emit(self)
class ROIPlotItem(PlotCurveItem):
"""Plot curve that monitors an ROI and image for changes to automatically replot."""
def __init__(self, roi, data, img, axes=(0,1), xVals=None, color=None):
self.roi = roi
self.roiData = data
self.roiImg = img
self.axes = axes
self.xVals = xVals
PlotCurveItem.__init__(self, self.getRoiData(), x=self.xVals, color=color)
#roi.connect(roi, QtCore.SIGNAL('regionChanged'), self.roiChangedEvent)
roi.sigRegionChanged.connect(self.roiChangedEvent)
#self.roiChangedEvent()
def getRoiData(self):
d = self.roi.getArrayRegion(self.roiData, self.roiImg, axes=self.axes)
if d is None:
return
while d.ndim > 1:
d = d.mean(axis=1)
return d
def roiChangedEvent(self):
d = self.getRoiData()
self.updateData(d, self.xVals)