515 lines
18 KiB
Python
515 lines
18 KiB
Python
from pyqtgraph.Qt import QtGui, QtCore
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from scipy.fftpack import fft
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import numpy as np
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import scipy.stats
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from .GraphicsObject import GraphicsObject
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import pyqtgraph.functions as fn
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from pyqtgraph import debug
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from pyqtgraph.Point import Point
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import pyqtgraph as pg
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import struct, sys
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__all__ = ['PlotCurveItem']
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class PlotCurveItem(GraphicsObject):
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"""
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Class representing a single plot curve. Instances of this class are created
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automatically as part of PlotDataItem; these rarely need to be instantiated
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directly.
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Features:
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- Fast data update
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- FFT display mode (accessed via PlotItem context menu)
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- Fill under curve
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- Mouse interaction
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==================== ===============================================
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**Signals:**
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sigPlotChanged(self) Emitted when the data being plotted has changed
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sigClicked(self) Emitted when the curve is clicked
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==================== ===============================================
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"""
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sigPlotChanged = QtCore.Signal(object)
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sigClicked = QtCore.Signal(object)
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def __init__(self, *args, **kargs):
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"""
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Forwards all arguments to :func:`setData <pyqtgraph.PlotCurveItem.setData>`.
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Some extra arguments are accepted as well:
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============== =======================================================
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**Arguments:**
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parent The parent GraphicsObject (optional)
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clickable If True, the item will emit sigClicked when it is
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clicked on. Defaults to False.
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============== =======================================================
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"""
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GraphicsObject.__init__(self, kargs.get('parent', None))
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self.clear()
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self.path = None
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self.fillPath = None
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## this is disastrous for performance.
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#self.setCacheMode(QtGui.QGraphicsItem.DeviceCoordinateCache)
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self.metaData = {}
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self.opts = {
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'pen': fn.mkPen('w'),
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'shadowPen': None,
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'fillLevel': None,
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'brush': None,
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'stepMode': False,
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'name': None,
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'antialias': pg.getConfigOption('antialias'),
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}
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self.setClickable(kargs.get('clickable', False))
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self.setData(*args, **kargs)
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def implements(self, interface=None):
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ints = ['plotData']
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if interface is None:
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return ints
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return interface in ints
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def setClickable(self, s):
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"""Sets whether the item responds to mouse clicks."""
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self.clickable = s
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def getData(self):
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return self.xData, self.yData
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def dataBounds(self, ax, frac=1.0, orthoRange=None):
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(x, y) = self.getData()
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if x is None or len(x) == 0:
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return (0, 0)
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if ax == 0:
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d = x
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d2 = y
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elif ax == 1:
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d = y
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d2 = x
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if orthoRange is not None:
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mask = (d2 >= orthoRange[0]) * (d2 <= orthoRange[1])
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d = d[mask]
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d2 = d2[mask]
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if frac >= 1.0:
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return (d.min(), d.max())
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elif frac <= 0.0:
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raise Exception("Value for parameter 'frac' must be > 0. (got %s)" % str(frac))
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else:
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return (scipy.stats.scoreatpercentile(d, 50 - (frac * 50)), scipy.stats.scoreatpercentile(d, 50 + (frac * 50)))
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def setPen(self, *args, **kargs):
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"""Set the pen used to draw the curve."""
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self.opts['pen'] = fn.mkPen(*args, **kargs)
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self.update()
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def setShadowPen(self, *args, **kargs):
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"""Set the shadow pen used to draw behind tyhe primary pen.
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This pen must have a larger width than the primary
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pen to be visible.
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"""
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self.opts['shadowPen'] = fn.mkPen(*args, **kargs)
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self.update()
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def setBrush(self, *args, **kargs):
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"""Set the brush used when filling the area under the curve"""
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self.opts['brush'] = fn.mkBrush(*args, **kargs)
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self.update()
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def setFillLevel(self, level):
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"""Set the level filled to when filling under the curve"""
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self.opts['fillLevel'] = level
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self.fillPath = None
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self.update()
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#def setColor(self, color):
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#self.pen.setColor(color)
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#self.update()
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#def setAlpha(self, alpha, auto):
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#self.opts['alphaHint'] = alpha
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#self.opts['alphaMode'] = auto
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#self.update()
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#def setSpectrumMode(self, mode):
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#self.opts['spectrumMode'] = mode
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#self.xDisp = self.yDisp = None
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#self.path = None
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#self.update()
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#def setLogMode(self, mode):
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#self.opts['logMode'] = mode
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#self.xDisp = self.yDisp = None
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#self.path = None
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#self.update()
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#def setPointMode(self, mode):
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#self.opts['pointMode'] = mode
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#self.update()
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#def setDownsampling(self, ds):
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#if self.opts['downsample'] != ds:
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#self.opts['downsample'] = ds
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#self.xDisp = self.yDisp = None
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#self.path = None
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#self.update()
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def setData(self, *args, **kargs):
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"""
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============== ========================================================
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**Arguments:**
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x, y (numpy arrays) Data to show
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pen Pen to use when drawing. Any single argument accepted by
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:func:`mkPen <pyqtgraph.mkPen>` is allowed.
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shadowPen Pen for drawing behind the primary pen. Usually this
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is used to emphasize the curve by providing a
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high-contrast border. Any single argument accepted by
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:func:`mkPen <pyqtgraph.mkPen>` is allowed.
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fillLevel (float or None) Fill the area 'under' the curve to
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*fillLevel*
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brush QBrush to use when filling. Any single argument accepted
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by :func:`mkBrush <pyqtgraph.mkBrush>` is allowed.
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antialias (bool) Whether to use antialiasing when drawing. This
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is disabled by default because it decreases performance.
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============== ========================================================
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If non-keyword arguments are used, they will be interpreted as
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setData(y) for a single argument and setData(x, y) for two
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arguments.
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"""
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self.updateData(*args, **kargs)
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def updateData(self, *args, **kargs):
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prof = debug.Profiler('PlotCurveItem.updateData', disabled=True)
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if len(args) == 1:
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kargs['y'] = args[0]
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elif len(args) == 2:
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kargs['x'] = args[0]
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kargs['y'] = args[1]
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if 'y' not in kargs or kargs['y'] is None:
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kargs['y'] = np.array([])
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if 'x' not in kargs or kargs['x'] is None:
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kargs['x'] = np.arange(len(kargs['y']))
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for k in ['x', 'y']:
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data = kargs[k]
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if isinstance(data, list):
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data = np.array(data)
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kargs[k] = data
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if not isinstance(data, np.ndarray) or data.ndim > 1:
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raise Exception("Plot data must be 1D ndarray.")
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if 'complex' in str(data.dtype):
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raise Exception("Can not plot complex data types.")
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prof.mark("data checks")
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#self.setCacheMode(QtGui.QGraphicsItem.NoCache) ## Disabling and re-enabling the cache works around a bug in Qt 4.6 causing the cached results to display incorrectly
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## Test this bug with test_PlotWidget and zoom in on the animated plot
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self.prepareGeometryChange()
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self.yData = kargs['y'].view(np.ndarray)
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self.xData = kargs['x'].view(np.ndarray)
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prof.mark('copy')
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if 'stepMode' in kargs:
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self.opts['stepMode'] = kargs['stepMode']
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if self.opts['stepMode'] is True:
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if len(self.xData) != len(self.yData)+1: ## allow difference of 1 for step mode plots
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raise Exception("len(X) must be len(Y)+1 since stepMode=True (got %s and %s)" % (str(x.shape), str(y.shape)))
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else:
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if self.xData.shape != self.yData.shape: ## allow difference of 1 for step mode plots
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raise Exception("X and Y arrays must be the same shape--got %s and %s." % (str(x.shape), str(y.shape)))
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self.path = None
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self.fillPath = None
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#self.xDisp = self.yDisp = None
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if 'name' in kargs:
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self.opts['name'] = kargs['name']
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if 'pen' in kargs:
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self.setPen(kargs['pen'])
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if 'shadowPen' in kargs:
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self.setShadowPen(kargs['shadowPen'])
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if 'fillLevel' in kargs:
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self.setFillLevel(kargs['fillLevel'])
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if 'brush' in kargs:
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self.setBrush(kargs['brush'])
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if 'antialias' in kargs:
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self.opts['antialias'] = kargs['antialias']
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prof.mark('set')
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self.update()
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prof.mark('update')
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self.sigPlotChanged.emit(self)
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prof.mark('emit')
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prof.finish()
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def generatePath(self, x, y):
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prof = debug.Profiler('PlotCurveItem.generatePath', disabled=True)
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path = QtGui.QPainterPath()
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## Create all vertices in path. The method used below creates a binary format so that all
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## vertices can be read in at once. This binary format may change in future versions of Qt,
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## so the original (slower) method is left here for emergencies:
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#path.moveTo(x[0], y[0])
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#for i in range(1, y.shape[0]):
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# path.lineTo(x[i], y[i])
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## Speed this up using >> operator
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## Format is:
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## numVerts(i4) 0(i4)
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## x(f8) y(f8) 0(i4) <-- 0 means this vertex does not connect
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## x(f8) y(f8) 1(i4) <-- 1 means this vertex connects to the previous vertex
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## ...
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## 0(i4)
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##
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## All values are big endian--pack using struct.pack('>d') or struct.pack('>i')
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if self.opts['stepMode']:
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## each value in the x/y arrays generates 2 points.
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x2 = np.empty((len(x),2), dtype=x.dtype)
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x2[:] = x[:,np.newaxis]
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if self.opts['fillLevel'] is None:
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x = x2.reshape(x2.size)[1:-1]
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y2 = np.empty((len(y),2), dtype=y.dtype)
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y2[:] = y[:,np.newaxis]
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y = y2.reshape(y2.size)
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else:
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## If we have a fill level, add two extra points at either end
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x = x2.reshape(x2.size)
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y2 = np.empty((len(y)+2,2), dtype=y.dtype)
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y2[1:-1] = y[:,np.newaxis]
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y = y2.reshape(y2.size)[1:-1]
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y[0] = self.opts['fillLevel']
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y[-1] = self.opts['fillLevel']
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if sys.version_info[0] == 2: ## So this is disabled for python 3... why??
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n = x.shape[0]
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# create empty array, pad with extra space on either end
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arr = np.empty(n+2, dtype=[('x', '>f8'), ('y', '>f8'), ('c', '>i4')])
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# write first two integers
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prof.mark('allocate empty')
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arr.data[12:20] = struct.pack('>ii', n, 0)
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prof.mark('pack header')
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# Fill array with vertex values
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arr[1:-1]['x'] = x
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arr[1:-1]['y'] = y
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arr[1:-1]['c'] = 1
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prof.mark('fill array')
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# write last 0
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lastInd = 20*(n+1)
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arr.data[lastInd:lastInd+4] = struct.pack('>i', 0)
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prof.mark('footer')
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# create datastream object and stream into path
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buf = QtCore.QByteArray(arr.data[12:lastInd+4]) # I think one unnecessary copy happens here
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prof.mark('create buffer')
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ds = QtCore.QDataStream(buf)
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prof.mark('create datastream')
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ds >> path
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prof.mark('load')
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prof.finish()
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else:
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path.moveTo(x[0], y[0])
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for i in range(1, y.shape[0]):
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path.lineTo(x[i], y[i])
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return path
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def shape(self):
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if self.path is None:
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try:
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self.path = self.generatePath(*self.getData())
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except:
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return QtGui.QPainterPath()
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return self.path
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def boundingRect(self):
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(x, y) = self.getData()
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if x is None or y is None or len(x) == 0 or len(y) == 0:
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return QtCore.QRectF()
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if self.opts['shadowPen'] is not None:
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lineWidth = (max(self.opts['pen'].width(), self.opts['shadowPen'].width()) + 1)
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else:
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lineWidth = (self.opts['pen'].width()+1)
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pixels = self.pixelVectors()
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if pixels == (None, None):
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pixels = [Point(0,0), Point(0,0)]
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xmin = x.min()
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xmax = x.max()
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ymin = y.min()
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ymax = y.max()
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if self.opts['fillLevel'] is not None:
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ymin = min(ymin, self.opts['fillLevel'])
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ymax = max(ymax, self.opts['fillLevel'])
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xmin -= pixels[0].x() * lineWidth
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xmax += pixels[0].x() * lineWidth
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ymin -= abs(pixels[1].y()) * lineWidth
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ymax += abs(pixels[1].y()) * lineWidth
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return QtCore.QRectF(xmin, ymin, xmax-xmin, ymax-ymin)
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def paint(self, p, opt, widget):
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prof = debug.Profiler('PlotCurveItem.paint '+str(id(self)), disabled=True)
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if self.xData is None:
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return
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#if self.opts['spectrumMode']:
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#if self.specPath is None:
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#self.specPath = self.generatePath(*self.getData())
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#path = self.specPath
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#else:
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x = None
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y = None
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if self.path is None:
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x,y = self.getData()
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if x is None or len(x) == 0 or y is None or len(y) == 0:
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return
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self.path = self.generatePath(x,y)
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self.fillPath = None
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path = self.path
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prof.mark('generate path')
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if self._exportOpts is not False:
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aa = self._exportOpts.get('antialias', True)
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else:
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aa = self.opts['antialias']
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p.setRenderHint(p.Antialiasing, aa)
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if self.opts['brush'] is not None and self.opts['fillLevel'] is not None:
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if self.fillPath is None:
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if x is None:
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x,y = self.getData()
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p2 = QtGui.QPainterPath(self.path)
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p2.lineTo(x[-1], self.opts['fillLevel'])
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p2.lineTo(x[0], self.opts['fillLevel'])
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p2.lineTo(x[0], y[0])
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p2.closeSubpath()
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self.fillPath = p2
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prof.mark('generate fill path')
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p.fillPath(self.fillPath, self.opts['brush'])
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prof.mark('draw fill path')
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## Copy pens and apply alpha adjustment
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sp = QtGui.QPen(self.opts['shadowPen'])
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cp = QtGui.QPen(self.opts['pen'])
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#for pen in [sp, cp]:
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#if pen is None:
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#continue
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#c = pen.color()
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#c.setAlpha(c.alpha() * self.opts['alphaHint'])
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#pen.setColor(c)
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##pen.setCosmetic(True)
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if sp is not None and sp.style() != QtCore.Qt.NoPen:
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p.setPen(sp)
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p.drawPath(path)
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p.setPen(cp)
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p.drawPath(path)
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prof.mark('drawPath')
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#print "Render hints:", int(p.renderHints())
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prof.finish()
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#p.setPen(QtGui.QPen(QtGui.QColor(255,0,0)))
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#p.drawRect(self.boundingRect())
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def clear(self):
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self.xData = None ## raw values
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self.yData = None
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self.xDisp = None ## display values (after log / fft)
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self.yDisp = None
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self.path = None
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#del self.xData, self.yData, self.xDisp, self.yDisp, self.path
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#def mousePressEvent(self, ev):
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##GraphicsObject.mousePressEvent(self, ev)
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#if not self.clickable:
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#ev.ignore()
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#if ev.button() != QtCore.Qt.LeftButton:
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#ev.ignore()
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#self.mousePressPos = ev.pos()
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#self.mouseMoved = False
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#def mouseMoveEvent(self, ev):
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##GraphicsObject.mouseMoveEvent(self, ev)
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#self.mouseMoved = True
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##print "move"
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#def mouseReleaseEvent(self, ev):
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##GraphicsObject.mouseReleaseEvent(self, ev)
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#if not self.mouseMoved:
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#self.sigClicked.emit(self)
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def mouseClickEvent(self, ev):
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if not self.clickable or ev.button() != QtCore.Qt.LeftButton:
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return
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ev.accept()
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self.sigClicked.emit(self)
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class ROIPlotItem(PlotCurveItem):
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"""Plot curve that monitors an ROI and image for changes to automatically replot."""
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def __init__(self, roi, data, img, axes=(0,1), xVals=None, color=None):
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self.roi = roi
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self.roiData = data
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self.roiImg = img
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self.axes = axes
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self.xVals = xVals
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PlotCurveItem.__init__(self, self.getRoiData(), x=self.xVals, color=color)
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#roi.connect(roi, QtCore.SIGNAL('regionChanged'), self.roiChangedEvent)
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roi.sigRegionChanged.connect(self.roiChangedEvent)
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#self.roiChangedEvent()
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def getRoiData(self):
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d = self.roi.getArrayRegion(self.roiData, self.roiImg, axes=self.axes)
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if d is None:
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return
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while d.ndim > 1:
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d = d.mean(axis=1)
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return d
|
|
|
|
def roiChangedEvent(self):
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d = self.getRoiData()
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|
self.updateData(d, self.xVals)
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|
|