Also MacOSX ReadMe files. Note that a few lib/doc files are
also "updated" because trailing spaces are removed, but their file
formats are the same because they were recently updated at 83672113.
I did "git checkout LFUNs.lyx" because this file is generated
automatically and has a special header.
Manuals, examples and templates that use (traditional) bibtex should have set the bibliography processor to bibtex. Else, these documents do not compile if a user has set the processor to 'biber' in the preferences